Plant FIBer expression Database

Lus10013826 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03430 639 / 0 phosphoadenosine phosphosulfate (PAPS) reductase family protein (.1)
AT4G21990 43 / 0.0005 3-Apr, PRH-26, PRH26, ATAPR3, APR3 PAPS REDUCTASE HOMOLOG 26, APS reductase 3 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026539
[exp]
836 / 0 AT5G03430 683 / 0.0 phosphoadenosine phosphosulfate (PAPS) reductase family protein (.1)
Lus10015560
[exp]
44 / 0.0003 AT4G21990 663 / 0.0 PAPS REDUCTASE HOMOLOG 26, APS reductase 3 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G123000
[exp]
699 / 0 AT5G03430 795 / 0.0 phosphoadenosine phosphosulfate (PAPS) reductase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00994 MoCF_biosynth Probable molybdopterin binding domain
CL0039 HUP PF01507 PAPS_reduct Phosphoadenosine phosphosulfate reductase family
Representative CDS sequence
>Lus10013826 pacid=23159464 polypeptide=Lus10013826 locus=Lus10013826.g ID=Lus10013826.BGIv1.0 annot-version=v1.0
ATGGTGGTCTCGTTCTTACAGCCGCTTGATACAAGCATTGTAACAGTTAGAACAGTGAATGATCAGGGTTCCCTTCATATTTCGGAATTCCCTGAACGCG
CTGCGCAATCCTTGGCTCGCTCGTCGAGCCGGCTCTTAGATAAACAATCTGTGGCGTTTATCGCAGCTTCTCCTTGCCAGTTCTCTCATTCTCTCTCTGC
CCCTCTGGGTTGCCCCGTCTATTGCGGCGGAAATCGGAGAAGCTTTTATACGTTGAATCTGCTCAAGCTTCCCTTTACGTGGCAGACGACGACTTTGGAG
TCCATTGCAGTCTCAGGGAAGATGGAGATCGATCAGGCAATAAGAGAGAGTGACGATAGGAGGCTCAAGACTAAGTATAACAACGCCATCTATGTTATTC
AAAGAGCTCTTGCTTTGTACCCAATTGAAGAGGTCGCTCTAAGCTTCAATGGAGGGAAGGATTCAACTGTACTCCTCCATCTACTTAGAGCTGGCTACTA
TTTGCTTAAGGGTGAACAGAGCTGTTCAAACGCGGGTTTGACTAGCTTCCCACTTAGAACAATATATTTTGAAAGTCCTTCTGCTTTTCCAGAGATTAAC
TCGTTCACCTATGATGCGGCATCAAGATACGGTTTGCAACTGGATATCGTAAGCTTAGACTTCAAGACTGGGTTGGAAAATCTACTTAAGGCTAATCCCA
TTCGGGCTATTTTCCTTGGTGTTCGAATTGGGGATCCTACTGCGGTAGGACAAGAACAGTTCTCTCCCAGTTCACCCGGATGGCCGCCTTTTATGCGAGT
TAATCCTATATTAGATTGGTCTTACAGGGATGTTTGGGCATTTCTTTTGACATGCAAGGTCCAATATTGCAGTCTTTACGACCAAGGGTATACATCAATT
GGGAGCATCCATGACACAACACCAAACTCATTGCTTTCGATCAGTGACTCTTCCGGTAGTCAGGAAAAGTTTAAACCTGCATATTTACTTTCTGATGGTA
GATCAGAAAGAGCAGGGAGGGTAAAGAAGATGTCTCATCCGATATCTCAGGGTTCTCCAGTTCTTGGAGATAGCCCAGATGTTCCAGATTCCCTTATAAA
CAGAATGCGAATAGGATCAGCCATTGCTGTAGGAGATGAGATCCTAACTAGTTTACAGCTGCTAGTTCTTGATATATGCTTACACGACTTTCCTTTGCCC
CAGATTGATTCTGTTGCTGAAGAAGTGGAAAGGCAAAAATCTTCAAATGACCTGGTATTCATATATGGGGGCATAGGTCCTTTGCATTCTGATGTAACCT
CAGCAGGTGTTGCCAAGGCTTTTGGGGTTCGCCTGGCCCCTGATGAAGAGTTCCAAGAATACCTGAGACATCTTATAGGCAAACACTGCACTGGTGACCG
CAATGAGATGGCTCTGTTACCTGAAGGTATCACTGAATTGTTGCATCATGAAAAGCTGGACGTACCTTTGATTAAGTGCCAGAATGTAATCCTGCTTACT
GCTACCAATAAATCCGAGCTGGACAAGGAATGGGAGTGTTTGGTTGACTTCACTAAATCATGCGGCTTGCTGACGGTGATGAAGCCAAATGTATCAAAGT
GCTTAACAACCCATCTTTCAGATGTGGAGACAGCTCAGCCATTGTCAAAACTTTGCATGCAGTACCCAGATCTCAATATTGTTTGCTATCGCAAGTCCAG
AGCAGGGCCTCTCATAATCAGTTTTAAAGGCAAGGAGCGAGCTAGGATTGAAGCAGCAGCAGAAGCATTGCGCAAGAAGTTCCCAGAGGGAGTTTTCTCC
GAAAACTAA
AA sequence
>Lus10013826 pacid=23159464 polypeptide=Lus10013826 locus=Lus10013826.g ID=Lus10013826.BGIv1.0 annot-version=v1.0
MVVSFLQPLDTSIVTVRTVNDQGSLHISEFPERAAQSLARSSSRLLDKQSVAFIAASPCQFSHSLSAPLGCPVYCGGNRRSFYTLNLLKLPFTWQTTTLE
SIAVSGKMEIDQAIRESDDRRLKTKYNNAIYVIQRALALYPIEEVALSFNGGKDSTVLLHLLRAGYYLLKGEQSCSNAGLTSFPLRTIYFESPSAFPEIN
SFTYDAASRYGLQLDIVSLDFKTGLENLLKANPIRAIFLGVRIGDPTAVGQEQFSPSSPGWPPFMRVNPILDWSYRDVWAFLLTCKVQYCSLYDQGYTSI
GSIHDTTPNSLLSISDSSGSQEKFKPAYLLSDGRSERAGRVKKMSHPISQGSPVLGDSPDVPDSLINRMRIGSAIAVGDEILTSLQLLVLDICLHDFPLP
QIDSVAEEVERQKSSNDLVFIYGGIGPLHSDVTSAGVAKAFGVRLAPDEEFQEYLRHLIGKHCTGDRNEMALLPEGITELLHHEKLDVPLIKCQNVILLT
ATNKSELDKEWECLVDFTKSCGLLTVMKPNVSKCLTTHLSDVETAQPLSKLCMQYPDLNIVCYRKSRAGPLIISFKGKERARIEAAAEALRKKFPEGVFS
EN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G03430 phosphoadenosine phosphosulfat... Lus10013826
[exp]
0 1
AT2G14850 unknown protein Lus10011422
[exp]
2.4 0.9010
AT1G24120 ARL1 ARG1-like 1 (.1) Lus10030827
[exp]
2.8 0.9140
AT3G54480 SKP5, SKIP5 SKP1/ASK-interacting protein 5... Lus10039556
[exp]
3.3 0.8929
AT3G16380 PAB6 poly(A) binding protein 6 (.1) Lus10038840
[exp]
6.0 0.8922
AT5G61540 N-terminal nucleophile aminohy... Lus10009560
[exp]
7.4 0.9029
AT1G76710 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 R... Lus10016600
[exp]
7.6 0.9125
AT5G20090 Uncharacterised protein family... Lus10025851
[exp]
8.9 0.9038
AT2G37480 unknown protein Lus10025314
[exp]
9.5 0.8994
AT5G05360 unknown protein Lus10012213
[exp]
9.9 0.8896
AT5G10700 Peptidyl-tRNA hydrolase II (PT... Lus10020143
[exp]
11.8 0.8781

Lus10013826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.