Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36885 226 / 9e-74 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026542 [exp] 307 / 3e-105 AT2G36885 303 / 4e-104 unknown protein Lus10010768 [exp] 62 / 5e-12 ND 96 / 5e-25
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G098900 [exp] 253 / 3e-84 AT2G36885 256 / 7e-86 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013829 pacid=23159456 polypeptide=Lus10013829 locus=Lus10013829.g ID=Lus10013829.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTAACTGCTGGGCTGAGCCATTCTCTCAACCATTCCTCTACTCTGTATCGGAACTACAATCAGAAACATCCCACTTCTCCTTCTTCTTCTT CTTCTTCTTCTTCTTCTTCTTCATTCTCCACCACTCCTCCTCTCTTCTTCACTGTCCCATCTCCCTCATTTCAATATACCGCTGCAGTCAATAGAGCCCC ACCCATTTCCTGCCTTGCAACGAAGAAGAACATCTACTCCACTGATGATGAAGAGGAAGAGGAAGTAGAAGTCGAAGAACAAGGAGTGGAAGAGACATTG CTCTACTCTGTATCTCCCCTGCCTCTCATCGTCCTAGCTGCTCTCCCTGGAGGTGGGGCAATTAGGTCAGTGTTTGGGCCGTTCGTGGAGATTGTCAAGT CCTTGAACCTCCCTGGATGGCTCGTCCATTGGGGTCACCCTGGCAATATGGCGGTGGTGCTGTTTGCAATGGGTGGATACGGAACATACCTGGGATTCCG AATTCGATACTCTGATGATGTGGAGGAGAAGGCCAAAGCCAAAGACTTGCATCCAAAGCTGCTAGCGGGTATGTTCTTCTTCTTCGCACTTGGTGCCACA GGCGGAGTTACTTCTCTCCTCACTTCTGACAGACCCATCTTAGAGAGTCCCCATGCTGTGACAGGATTCATAGGGCTTGGTCTCTTGACACTGCAAACCA TTCTGCCATCACTCTTTGAGGGAAATCCAGGGCTGAGGAATGTACATGGGATATTGGGGAGTGGGATAATGACACTTTTCCTCATCCACGCAGCTCTTGG GCTCCAACTTGGTCTCAGCTACTGA
AA sequence Show only first row Show all	>Lus10013829 pacid=23159456 polypeptide=Lus10013829 locus=Lus10013829.g ID=Lus10013829.BGIv1.0 annot-version=v1.0 MASLTAGLSHSLNHSSTLYRNYNQKHPTSPSSSSSSSSSSSFSTTPPLFFTVPSPSFQYTAAVNRAPPISCLATKKNIYSTDDEEEEEVEVEEQGVEETL LYSVSPLPLIVLAALPGGGAIRSVFGPFVEIVKSLNLPGWLVHWGHPGNMAVVLFAMGGYGTYLGFRIRYSDDVEEKAKAKDLHPKLLAGMFFFFALGAT GGVTSLLTSDRPILESPHAVTGFIGLGLLTLQTILPSLFEGNPGLRNVHGILGSGIMTLFLIHAALGLQLGLSY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36885			unknown protein		Lus10013829 [exp]	0	1
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003900 [exp]	1.7	0.8629
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041508 [exp]	2.4	0.8943
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10016855 [exp]	2.4	0.8781
AT5G05270			Chalcone-flavanone isomerase f...		Lus10012878 [exp]	3.3	0.8269
AT2G36885			unknown protein		Lus10026542 [exp]	6.3	0.8276
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	6.3	0.8539
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10040868 [exp]	8.5	0.8603
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040525 [exp]	9.5	0.8286
					Lus10015426 [exp]	9.5	0.8346
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	10.7	0.8440

Compare expression of checked genes

Lus10013829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.