Lus10013832 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17140 1041 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
AT4G38270 833 / 0 GAUT3 galacturonosyltransferase 3 (.1.2)
AT3G61130 709 / 0 GAUT1, LGT1 galacturonosyltransferase 1 (.1)
AT5G47780 551 / 6e-177 GAUT4 galacturonosyltransferase 4 (.1)
AT2G17220 535 / 2e-174 Kin3 kinase 3, Protein kinase superfamily protein (.1.2)
AT2G46480 501 / 8e-160 GAUT2, LGT2 galacturonosyltransferase 2 (.1)
AT4G35600 427 / 1e-134 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2)
AT1G18580 427 / 4e-133 GAUT11 galacturonosyltransferase 11 (.1)
AT2G20810 421 / 9e-131 GAUT10, LGT4 galacturonosyltransferase 10 (.1)
AT1G76360 416 / 1e-129 Protein kinase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026546 1903 / 0 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2)
Lus10026545 1698 / 0 AT2G17140 1002 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Lus10009311 695 / 0 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1)
Lus10041389 686 / 0 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1)
Lus10036540 683 / 0 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1)
Lus10023000 630 / 0 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2)
Lus10001392 627 / 0 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2)
Lus10038739 557 / 1e-178 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1)
Lus10024512 462 / 7e-147 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G205600 1228 / 0 AT2G17140 1150 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.004G206000 910 / 0 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2)
Potri.014G073800 711 / 0 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1)
Potri.002G151400 698 / 0 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1)
Potri.009G167400 608 / 0 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2)
Potri.004G206100 595 / 0 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2)
Potri.016G001700 532 / 2e-169 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1)
Potri.006G001100 517 / 1e-164 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1)
Potri.007G062700 494 / 1e-158 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2)
Potri.005G100900 475 / 1e-151 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF01501 Glyco_transf_8 Glycosyl transferase family 8
CL0020 TPR PF01535 PPR PPR repeat
CL0016 PKinase PF07714 PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence
>Lus10013832 pacid=23159440 polypeptide=Lus10013832 locus=Lus10013832.g ID=Lus10013832.BGIv1.0 annot-version=v1.0
ATGAGGTTTTGCTGCTGGTCTTCTTCACCCACCTCTCCTACGCCTACCTCCACTGGTCGTCTCAGTTCAGGAGGCGTGTCTCATACACCTAGCAGCAGCA
ATGCAACTTCATCAGGGAGTGGCAATACTAATTCTTCAAAGGGAAGCAATGTCTCTGGGAACAGTCAGTTTTCTGCATCCAGTGGCGATGACGCTTTTCC
CAATGGGCAGCTCTTGCCCACCCCACACTTGAGGATCTTCTCTTTCACCGAGCTTAAGCTCGCCACTAAGAACTTCAGGGCTGATACTGTGCTTGGAGAA
GGAGGGTTTGGTAAAGTTTACAAAGGTTGGCTTGATGAGAGGAAGCCTGGGAAATCTGGAAGTGGAACTGTGGTTGCTGTCAAGAAACTTAATTCTGAGA
GCTTGCAAGGATTGGAAGAATGGCAGTCAGAAATAAACTTCTTGGGAAGGCTTTCACACCCGAACCTTGTCAGGCTGTTGGGATACTGCTTGGAAGAGGA
TGAGCTTCTCCTTGTATATGAATTCATGCAGAAAGGAAGCTTGGAAAACCATCTATTTGGAAGGGGTGCAGCTGTTCAGCCACTTCCATGGGACACTCGG
TTGTCGATCGCCATAGGAGCTGCTCGAGGCCTTGCTTTCTTACATACACCGGATAAGAAAATCATTTATAGAGACTTTAAAGCCTCAAATATATTGCTGG
ATGGGTCTTACACATCCAAGATATCAGACTTCGGTTTGGCAAAGTTCGGTCCTTCGGCTAGTCAATCGCATGTGACTACTCGTGTCATGGGCACATACGG
TTATGCTGCTCCCGAGTATGTTTCCACAGGTCATCTATACGTGAAGAGCGATGTGTACGGGTTCGGAGTTGTGCTGGTCGAGATCTTGACAGGGTTAAGG
GCGCTCGACACAAGCAGACCGAGTGGGAGGCATAGCATAGCGGAATGGATCAAGCCTTATCTAAATGACAAGAGGAAGCTGAAAAGCATGATGGACACTA
ACTTGGAAGGGAAGTATCCTTCAAAAGCAGCATTCAGAATAGCACAGCTAGCTCTAGTTTGTCTGGAATCAGAGCCGAAAAATCGACCCCACATGAGGGA
AGTGGTGGAGACGTTGGAAAGGATTGCATCGAACAACGAGAGGACACTAGAGCCCCGATCACACCGTTCGAGCAACAACCGGCCTGTCGCTCACCGGAAT
GGCCAGAGACCGTTGCAGCTCCGCTCTCCACTGCATCAACAGCAAGATGCTGGTCAAGATTTGTTGCCATTGTTTTTTCTTGACAGGGAGCTGAAATCAC
TCCGCTCCTTCTCTGATTGTCAAGCGTGTGACGACACTAAGGATATTGACATTATTGCTACGTACAGTGATCCTTCTGGCAATGTGCGAGTTAGTAGGGT
TAAAATGAAAAACCTTTCTGCCTCGTGGGTGCTTGAGAACCCTGACGATGAGCATGATCGGCGTAACAGTAGTTCCAAGACATTGGAACATGGTAACTTC
CCGAAAGATAAGCCTCGGAAGCAAGTGATTCGTCAGCGGTTTGAAGGAGGCAAAACTCAGTTCCCCCTGAAATCTGTGATGAGTCCAGTGAAGCTCAAGC
GTCGGATTGCGCGGCAAAAGAGGAAAGATCTCCGAATTGCTGAGCTAATCCAACATGACAACGAAGCGGATAACCAGGCACGGTCAGCTGCAATAGAGCG
GTCTAAAGCACTGGACACGACTATCAGAGGGAAGTACAGTATATGGAGGAGAGATTTCGAAAATCCAAATTCCGATGCCATGTTGAAGCTCATGCGGGAC
CAGATGATAATGGCCAAGGCATATTCAAATATTGCCAAATCTAACAATGAAACAGGTCTTTACATTTCTCTGATGAAGAACTCCAAAGACAGTCAGCTCG
CCATTGGAGAAGCAACATCTGATGCTGAGCTTCATCCAAGTGCTCTTGATCGAGCTAAAGCTATGGGACGTGTTCTCTCTATGGCCAAGGACCAACTTTA
TGATTGTCCTACAATGTCAAGGAAGTTAAGGGCTATGCTGCAGTCTAGTGAGGAGCATTTGAATGCTGTGAGGAAAAAAAGCGCCTTCTTGATTCAGCTG
GCTGCTAAAACAGTTCCAAAGCCATTGCATTGCCTTCCTTTGCAGCTGGCTGCTGACTATTTCCTGCAGGGTCATCAGAACAAACAATATTTCAACAGTG
GAAAGCTTGAAAATCCTAAACTTTACCACTACGCCATATTCTCCGACAATGTGCTAGCCACATCCGTGGTTGTCAATTCCACTGTGCTGCATGCAAAAGA
ACCTCAGAAACACGTTTTCCATGTCGTAACAGATAAGTTGAACTTCGCGGCAATGAAAATGTGGTTCATTGTGAACCCTCCAGCACGAGCAACAATCGAG
GTGATGAACATAGATGATTTTAAGTGGTTAAATTCATCTTACTGTTCTGTCCTACGGCAACTGGAATCTTCCAGGGTTAAGGAGTACTATTTCAAGGCCA
ACCACCCGTCGTCTTTGTCAGCTGGATCTGACAATCTCAAGTACAGGAATCCAAAATACTTGTCTATGCTGAATCATCTTAGATTCTATCTTCCAGAAGT
CTATCCGAAGCTGGACAAGATCCTGTTTCTGGACGATGACATTGTCGTGCAAAAAGATTTGGCACCACTTTGGTCAGTTGATCTACGAGGAATGGTTAAT
GGCGCAGTGGAGACATGTAAGGAGAGCTTCCACAGGTTTGATAAGTATCTGAACTTCTCGAACCCGAAAATCAACGAGAACTTCCATCCAAATGCTTGCG
GGTGGGCATTCGGGATGAACATGTTCGATTTGAAGGAATGGAAGAAGCAGAACATCACTGGCATCTACCATTACTGGCAAGACCAGAATGAGGATAGAAC
TCTTTGGAAGTTGGGGACGTTGCCGCCTGGACTGATAACGTTCTATAACTTGACGTATCCGTTGGATCGAGGGTGGCATGTGTTGGGACTTGGATATGAT
CCTGCGTTGAACCAAACGGAGATAGAGAATGGAGCAGTGGTGCATTACAATGGGAACTACAAGCCGTGGTTGGATTTGGCAATTGCCAATGCAACATCAG
TGAATAAAAAACCAGCAGCCGGCCGGCCAACCACACTGCTCCCCTTATTACTGGCGGGGAAGCTCATATTCTTTGATCAGTTGAAGAAAATCTCAGGGTT
GCCGGAAGAACGAGCAGGTGGGGAAACACCGAAATTTCAACACCGGGAATCAATGGAGCCAACTGCCAAGCTCACCAGAGCACTCCTCGTCAACACCTCC
AACCCAAAGCTAGCATGGCATCTTTTCAAGCGCATTCTTACTCTACCTTCCCTTGACCATTTCCCCCATTCCGTTGAGACCATTACTCGAATCCTAGTCC
GCGCCAAACTCCTTAACGAGCTCGATGATCTTCACGTACGCCTGCATTCTAACCTGCCTGCACACATCTTACATCCTTGTCTTACTTCTTCGATTACAGT
CTCAGCTCAATCGGGCCAATTCGGTAAGGCCCTTTCTCATTTCAAAGCAATGCGTTTCCGGTTCCCAGATGAGCCGCCTTCCGTACGTCTGTATAATTGT
CTGATTAGGTCTTGCATCAAAGACGGGAGCGTCGAACACGTCGGTTGGCTGTATAAAGATATGATTGTAGCTGGGGTTTCTCCGGAGACTTTTACTTTCA
ATATTTTGATTGGTTTCCTTTGCAATGGTGGTCGTTTAGAAGAAGCACAGGAGCTGTTTGATAAAATGTCTGAGAAGGGATGTGAACCGAACGAGTTCAC
TTATGGGATTTTGGTTCGCGGGTATTGCAGAGCTGGGGACTCTACACGTGGATTGGAGCTTATGAGTGAAATGACGAGTCGAGGATTACTTCCTAACAAC
GTTGTGTATAATACTCTCATTTCTACATTCTGCAAGCAAGGTAAGAATGATGATGCCGAAAAATTGGTAGAAAGAATGAAAGAGGAAGGACTGCATCCTG
ATGTTGTGACTTTCAATTCTAGGATCTCAGCTCTTTGCGACGCTGGGAAAACTCTGGATGCTTGTAGGATTTTTAGAGATATGCAAAATGATCTACACTT
GGGGCTGCCGAGGCCCAATATCGTCACGTATAATTTGATGCTTAAGGGTTTCTTTAAGGAAGGACAGGTGGAGGATGCTAAGTCTCTGTTTGAGATTATG
AAGAACAATCGTGTGTTGGTGAATATAGAGAGTTATAATATTTGGTTGGCAGGTATGTTCAGGAACAGGAAGAATTTTGAGGCTCACCTAGTTTTTAAAG
AAATGATAGATATGGGAATCAAACCCAACATATGTTCTTGTAACATAATGATAGATGGGCTATGCAAAAATGGAATGTTCTCTGATGCGAGAACGTTGAT
GAAAGAAATGATAGTCAATCAGATTTTTCCAGATGCAGTAACTTATAGTACTTTACTTCATGGTTATTGCAGTCGAGGAATGGTCTTGCAAGCTAACAGT
GTTTTGCATGAGATGATGCAGAATGGTTGTAATCCAACGACTTACACGTGCAATATCTTACTGCACAGTCTTTGGAAGGAGGATAAAATACCTGAAGCTG
AGAAGCTGCTTCAGAAGATGCACGAGAGAGGCTATGGTGTGGATACTGTGACATGTAATATTATACTTGAAGGTCTTTGTAATCATGGGCAGCTGGATAA
GGCGATTGATGTTGTGAATGGTATGTGGGCACATGGAAGTGCTGCCCTTGGTAACTTAGGGAATTCTTTCATTGGCCTCATAGATGGTGAGAATAATGCG
AGAAAATGTGTGCCTGATTTGATCAGCTATTCAATTGTAATATCTGGATTATGCAAGGCTGGTAGAGTTGATGAGGCTAAGAAGAAGTTCCTTGAGATGA
TGGGAAAACACTTGCAGCCTGATTCGGCCATTTATGATACTTTCATTCGTAGCTTCTGTAAAGAAGGGAAGTTATCTGCTGCATTTCGAGTGCTTAAAGA
CATGGAGAAAAGAGGTTGCAATAAAACCATACATACATTCAACTCCTTGATCCTGGGTCTAGGAAGAAAAAATCAACTATTTGAAATCCACGGTTTGATG
GATGAGATGAAAGAAAGAGGGATTTCTCCAGATGTTTACACATATAACAATCTTCTCAGTTGTCTATGCGAAGGAGGGAGAACTAAGGACGCTCCATCCG
TTCTGGAGGAGATGCTGCAAAAGGGTATTTCTCCAAATGTTTCTTCTTTCAGAACATTACTTGCAGCTTTCTGCAAGGGTAGTGATTTCAATGCAGCACA
TGAGGTGTTTGAGATTGCTCTGGATGTGTGTGGCCACAAGGAAGCCCTTTATAGCTTAATGTTTAATGAGTTAGTTTCCGGTGGATTAGTTGCTGAAGCT
AGACAGCTCTTCGAGACTGTGCTAGATAGGTCTTTTGACATGGCAAACTTCCTCTACAAAGATCTCATTGATAGACTTTGTAAGAATGACAAGTTGGAAG
ATGCCAGTTGTATACTACATAAGTTGATGGATAAAGGATATAAATTCGATCCAGCTGCATTCATGCCAGTAATTGAAGGCCTAGGCCGTGTGGGAAACAA
GGGTGAAGCTGAAGAACTTTCAGAGAGAATGATGGAGATGGTTTCGGAGGATAATGTGAAAAACAGGGCTGGTGCCTCTGGAACGAGAAATAAGGATGAG
GGGACTGATTGGAAAACGATAATACAGAGGGATGACGGAAGTGGAGTTGCACTGAAAGCTCTTAAGCAGGTACAGAAGGGATGGGGTCGGGGATGCCTTT
TAGGTAAACGACCTCAGGAAGATGACTCTACCTAG
AA sequence
>Lus10013832 pacid=23159440 polypeptide=Lus10013832 locus=Lus10013832.g ID=Lus10013832.BGIv1.0 annot-version=v1.0
MRFCCWSSSPTSPTPTSTGRLSSGGVSHTPSSSNATSSGSGNTNSSKGSNVSGNSQFSASSGDDAFPNGQLLPTPHLRIFSFTELKLATKNFRADTVLGE
GGFGKVYKGWLDERKPGKSGSGTVVAVKKLNSESLQGLEEWQSEINFLGRLSHPNLVRLLGYCLEEDELLLVYEFMQKGSLENHLFGRGAAVQPLPWDTR
LSIAIGAARGLAFLHTPDKKIIYRDFKASNILLDGSYTSKISDFGLAKFGPSASQSHVTTRVMGTYGYAAPEYVSTGHLYVKSDVYGFGVVLVEILTGLR
ALDTSRPSGRHSIAEWIKPYLNDKRKLKSMMDTNLEGKYPSKAAFRIAQLALVCLESEPKNRPHMREVVETLERIASNNERTLEPRSHRSSNNRPVAHRN
GQRPLQLRSPLHQQQDAGQDLLPLFFLDRELKSLRSFSDCQACDDTKDIDIIATYSDPSGNVRVSRVKMKNLSASWVLENPDDEHDRRNSSSKTLEHGNF
PKDKPRKQVIRQRFEGGKTQFPLKSVMSPVKLKRRIARQKRKDLRIAELIQHDNEADNQARSAAIERSKALDTTIRGKYSIWRRDFENPNSDAMLKLMRD
QMIMAKAYSNIAKSNNETGLYISLMKNSKDSQLAIGEATSDAELHPSALDRAKAMGRVLSMAKDQLYDCPTMSRKLRAMLQSSEEHLNAVRKKSAFLIQL
AAKTVPKPLHCLPLQLAADYFLQGHQNKQYFNSGKLENPKLYHYAIFSDNVLATSVVVNSTVLHAKEPQKHVFHVVTDKLNFAAMKMWFIVNPPARATIE
VMNIDDFKWLNSSYCSVLRQLESSRVKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLDKILFLDDDIVVQKDLAPLWSVDLRGMVN
GAVETCKESFHRFDKYLNFSNPKINENFHPNACGWAFGMNMFDLKEWKKQNITGIYHYWQDQNEDRTLWKLGTLPPGLITFYNLTYPLDRGWHVLGLGYD
PALNQTEIENGAVVHYNGNYKPWLDLAIANATSVNKKPAAGRPTTLLPLLLAGKLIFFDQLKKISGLPEERAGGETPKFQHRESMEPTAKLTRALLVNTS
NPKLAWHLFKRILTLPSLDHFPHSVETITRILVRAKLLNELDDLHVRLHSNLPAHILHPCLTSSITVSAQSGQFGKALSHFKAMRFRFPDEPPSVRLYNC
LIRSCIKDGSVEHVGWLYKDMIVAGVSPETFTFNILIGFLCNGGRLEEAQELFDKMSEKGCEPNEFTYGILVRGYCRAGDSTRGLELMSEMTSRGLLPNN
VVYNTLISTFCKQGKNDDAEKLVERMKEEGLHPDVVTFNSRISALCDAGKTLDACRIFRDMQNDLHLGLPRPNIVTYNLMLKGFFKEGQVEDAKSLFEIM
KNNRVLVNIESYNIWLAGMFRNRKNFEAHLVFKEMIDMGIKPNICSCNIMIDGLCKNGMFSDARTLMKEMIVNQIFPDAVTYSTLLHGYCSRGMVLQANS
VLHEMMQNGCNPTTYTCNILLHSLWKEDKIPEAEKLLQKMHERGYGVDTVTCNIILEGLCNHGQLDKAIDVVNGMWAHGSAALGNLGNSFIGLIDGENNA
RKCVPDLISYSIVISGLCKAGRVDEAKKKFLEMMGKHLQPDSAIYDTFIRSFCKEGKLSAAFRVLKDMEKRGCNKTIHTFNSLILGLGRKNQLFEIHGLM
DEMKERGISPDVYTYNNLLSCLCEGGRTKDAPSVLEEMLQKGISPNVSSFRTLLAAFCKGSDFNAAHEVFEIALDVCGHKEALYSLMFNELVSGGLVAEA
RQLFETVLDRSFDMANFLYKDLIDRLCKNDKLEDASCILHKLMDKGYKFDPAAFMPVIEGLGRVGNKGEAEELSERMMEMVSEDNVKNRAGASGTRNKDE
GTDWKTIIQRDDGSGVALKALKQVQKGWGRGCLLGKRPQEDDST

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G17140 Pentatricopeptide repeat (PPR)... Lus10013832 0 1
AT4G38270 GAUT3 galacturonosyltransferase 3 (.... Lus10026546 1.7 0.9487
AT5G04550 Protein of unknown function (D... Lus10028839 4.9 0.8731
AT5G24590 NAC TIP, ANAC091 Arabidopsis NAC domain contain... Lus10015587 7.3 0.9076
AT3G49070 Protein of unknown function (D... Lus10027501 7.4 0.8080
AT5G17680 disease resistance protein (TI... Lus10030345 7.5 0.8721
AT4G32030 unknown protein Lus10001935 7.7 0.8966
AT2G23810 TET8 tetraspanin8 (.1) Lus10019965 7.7 0.9105
AT3G11760 unknown protein Lus10013598 8.0 0.8696
AT4G17230 GRAS SCL13 SCARECROW-like 13 (.1) Lus10000539 9.2 0.9074
AT5G48150 GRAS PAT1 phytochrome a signal transduct... Lus10036623 11.6 0.8825

Lus10013832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.