Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38260 305 / 3e-104 Protein of unknown function (DUF833) (.1) AT1G20680 108 / 5e-28 Protein of unknown function (DUF833) (.1), Protein of unknown function (DUF833) (.2) AT1G20740 103 / 4e-26 Protein of unknown function (DUF833) (.1) AT1G20730 98 / 4e-24 Protein of unknown function (DUF833) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026547 [exp] 562 / 0 AT4G38260 305 / 2e-104 Protein of unknown function (DUF833) (.1) Lus10016023 [exp] 285 / 3e-96 AT4G38260 267 / 1e-89 Protein of unknown function (DUF833) (.1) Lus10012251 [exp] 252 / 8e-84 AT4G38260 242 / 4e-80 Protein of unknown function (DUF833) (.1) Lus10016024 [exp] 244 / 1e-80 AT4G38260 239 / 4e-79 Protein of unknown function (DUF833) (.1) Lus10012253 [exp] 209 / 8e-67 AT4G38260 208 / 1e-66 Protein of unknown function (DUF833) (.1) Lus10012254 [exp] 113 / 6e-30 AT4G38260 97 / 4e-24 Protein of unknown function (DUF833) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G206300 [exp] 366 / 1e-128 AT4G38260 306 / 5e-105 Protein of unknown function (DUF833) (.1) Potri.005G252250 [exp] 307 / 2e-105 AT4G38260 285 / 9e-97 Protein of unknown function (DUF833) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05742 [flax] [poplar] TANGO2 Transport and Golgi organisation 2
Representative CDS sequence Show only first row Show all	>Lus10013833 pacid=23159516 polypeptide=Lus10013833 locus=Lus10013833.g ID=Lus10013833.BGIv1.0 annot-version=v1.0 ATGTGTATTGCAGTCTTTCTATGGCGAGCTCATCCCCTCCACCCCTTCCTCCTGTTGCTCAACCGAGACGAATTCCATAGTCGACCGACGACGCCGCTGG GATGGTGGAGGAACGAAGAGGACCATGACGGAGGAGTTGAATTTCTGGGCGGAAGAGACGAGAAGGCCGGCGGTACGTGGTTGGCCGCCACTAGATATGG TCGAATCGCTTTCATAACTAACGTTCGGGAACTCTCCTCCGCCCCTGCCGCTAATAGCCGAGGTCGCCTCCCGATTCGTTTTTTGCAGAGCGACAAGAAC CCTTTGGAGTTTGCTAATGAGCTTGCGGAGGAGATGGATAGCTACAATGGGTTTAACCTGGTAGTAGCTGATGTTAGTGCCAAGACCATGGTTTACATTA CCAACAGACCGAAACCAAATTGTCCAGCCGTTACAGTTGTTTCACCTGGTATACACGTCCTATCCAATGCTAGCCTTGATACTCCATGGCCCAAGGCACA AAGACTCAGCCGCAGCTTCAAGGAATTCATGGATAGATACGGTGAACAGGAAGAAGTTCCGGTGAAAGAGATTGTCCAAACATTGATGATGAATACAATC AAGGATGAGGATCGAACCTTGCTACCTGGAGTGTATCCTCCTGATTATGAATACCAAGCGAGTTCCATATTTGTTGACATAGATTCCCCATCCGGTCGAT ATGGGACAAGAAGCACTTCCGCTGTGTTGGTGAGAAGAAGTAGCGAGGTGAACTTTTACGAGAGGTACATTGACGATGAAGAATGGAAGGAGCAGAGTGT CTGTTATACAATACTGCAGAAATCAGATGATCTGGTCTTTAGTTCATTACAGTGA
AA sequence Show only first row Show all	>Lus10013833 pacid=23159516 polypeptide=Lus10013833 locus=Lus10013833.g ID=Lus10013833.BGIv1.0 annot-version=v1.0 MCIAVFLWRAHPLHPFLLLLNRDEFHSRPTTPLGWWRNEEDHDGGVEFLGGRDEKAGGTWLAATRYGRIAFITNVRELSSAPAANSRGRLPIRFLQSDKN PLEFANELAEEMDSYNGFNLVVADVSAKTMVYITNRPKPNCPAVTVVSPGIHVLSNASLDTPWPKAQRLSRSFKEFMDRYGEQEEVPVKEIVQTLMMNTI KDEDRTLLPGVYPPDYEYQASSIFVDIDSPSGRYGTRSTSAVLVRRSSEVNFYERYIDDEEWKEQSVCYTILQKSDDLVFSSLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38260			Protein of unknown function (D...		Lus10013833 [exp]	0	1
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10001724 [exp]	6.5	0.7488
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Lus10030224 [exp]	8.0	0.7484
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10029341 [exp]	10.6	0.7640
AT1G23780			F-box family protein (.1)		Lus10006139 [exp]	12.7	0.7977
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10022546 [exp]	27.3	0.7824
AT5G05570			transducin family protein / WD...		Lus10009082 [exp]	34.1	0.7562
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10002849 [exp]	39.2	0.7115
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10025584 [exp]	47.0	0.7256
AT5G25770			alpha/beta-Hydrolases superfam...		Lus10011694 [exp]	59.2	0.7289
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10010521 [exp]	64.6	0.7390

Compare expression of checked genes

Lus10013833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.