Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44370 693 / 0 PHT4;6 phosphate transporter 4;6 (.1) AT2G29650 268 / 2e-84 PHT4;1, ANTR1 anion transporter 1, phosphate transporter 4;1 (.1.2.3) AT4G00370 268 / 3e-84 PHT4;4, ANTR2 anion transporter 2, Major facilitator superfamily protein (.1) AT5G20380 210 / 4e-62 PHT4;5 phosphate transporter 4;5 (.1) AT2G38060 209 / 7e-62 PHT4;2 phosphate transporter 4;2 (.1) AT3G46980 200 / 3e-58 PHT4;3 phosphate transporter 4;3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026551 [exp] 867 / 0 AT5G44370 713 / 0.0 phosphate transporter 4;6 (.1) Lus10018218 [exp] 263 / 2e-82 AT2G29650 761 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10040686 [exp] 264 / 6e-80 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10036366 [exp] 253 / 1e-77 AT4G00370 812 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10035532 [exp] 211 / 2e-62 AT2G38060 669 / 0.0 phosphate transporter 4;2 (.1) Lus10014769 [exp] 202 / 5e-57 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10027761 [exp] 189 / 2e-55 AT2G38060 619 / 0.0 phosphate transporter 4;2 (.1) Lus10018203 [exp] 193 / 1e-53 AT3G46980 689 / 0.0 phosphate transporter 4;3 (.1.2.3) Lus10040703 [exp] 187 / 1e-53 AT3G46980 673 / 0.0 phosphate transporter 4;3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G168200 [exp] 739 / 0 AT5G44370 676 / 0.0 phosphate transporter 4;6 (.1) Potri.014G085700 [exp] 277 / 4e-87 AT4G00370 841 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Potri.009G043800 [exp] 263 / 2e-82 AT2G29650 778 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.001G249800 [exp] 257 / 2e-80 AT2G29650 773 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.018G121600 [exp] 210 / 3e-62 AT5G20380 654 / 0.0 phosphate transporter 4;5 (.1) Potri.006G062300 [exp] 208 / 3e-61 AT5G20380 636 / 0.0 phosphate transporter 4;5 (.1) Potri.016G111000 [exp] 206 / 8e-61 AT2G38060 687 / 0.0 phosphate transporter 4;2 (.1) Potri.001G248200 [exp] 194 / 2e-56 AT3G46980 675 / 0.0 phosphate transporter 4;3 (.1.2.3) Potri.002G160650 [exp] 73 / 5e-15 AT4G00370 190 / 3e-58 anion transporter 2, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10013836 pacid=23159454 polypeptide=Lus10013836 locus=Lus10013836.g ID=Lus10013836.BGIv1.0 annot-version=v1.0 ATGAAGGGGATCATCCTCCCAAAGCGGTACTTGATTGTCATCTTAACATTTATTAGCACTTGCGTCTGCTATATAGAACGAGTGGGTTTCTCTATAGCCT ACACCGTTGCTGCTGATGCAGCCGGGGTGAACGAATCAAGCAAAGGAGTGATTCTATCGACATTCTACTATGGTTACGCTTGTTCTCAGGTGCCCGGAGG ATGGGCAGCTCAGAGGATCGGAGGAAGGAAAGTTCTCCTTCTCTCGTTTGTTTTGTGGTCGTCTACTTGTTTTTTGGTCCCTCTCGATCCAAACCGTGTT ACAGTCATGGTGCTTGCCCGCTTGCTTGTTGGTGTCGCACAAGGTTTTATCTTTCCCTCCATACACACTGTCCTAGCTCAGTGGGTTCCTCCCCATGAGA GGTCCAGATCAGTTTCTCTTACGACCTCTGGAATGTACTTAGGTGCAGCTATGGGAATGCTCATCCTCCCAAGTTTAGTGAAATTCAAGGGCCCACAATC TGTATTCGTTGCTGAAGCTGTATTAGGTATTCTCTGGTGTCTACTGTGGTTCAAGTATGCAAGTGACCCTCCTCGGTCGGAGCATCCAAAAGCCACTGCT GCTGGGTTCGGAGAGTCTTTGCTGCCACTGAAAGCCAGTCAGAAGGTAAAAGTTGAGAACGGAGTAAGTAGTTCACGAACCGCACAAATTCCTTGGAAAA AGATCTTACTCAGCTTACCGGTTTGGGCAATTGTGGTGAACAATTTCACTTTCCATTATGCATTGTATGTGCTAATGAATTGGCTACCGACGTACTTCGA ACAAGGCTTGCAGCTTAGTCTTCAAGAAATGGGTTCCTCTAAGATGATGCCATATCTCAACATGTTCCTTTTCTCTAACATTGGTGGAGTCGCTGCTGAC CATCTGATCACTAAAAGGATAATGTCCGTGACTAGAACGCGGAAGGTTTTGAACACGATCGGGTTTATAGTTGCGGCTTTTGCCTTGATGGCACTTCCTA TGTTCAGAACTTCTGATGGGGCTGTGTTCTGTTCTTCTATCGCTCTTGGCTTTTTAGCATTGGGAAGGGCCGGATTCGCGGTGAATCACATGGATATCGC TCCGAGATATGCAGGAATAGTTATGGGAGTTTCTAATACTGCTGGCACTTTGGCTGGGATTGTTGGGGTTGACTTGACTGGCAAGCTTCTTGAAGCTGCA AAATTGGCTTATTCTGATCTATCGAGTCCCGAAAGTTGGAGAGTAGTGTTCTGCATACCGGGTCTTCTCTGCATCTTCAGTTCTGTAGTGTTCTTACTGT TCTCCAGCGGGGAGAGGATTTTTGACTGA
AA sequence Show only first row Show all	>Lus10013836 pacid=23159454 polypeptide=Lus10013836 locus=Lus10013836.g ID=Lus10013836.BGIv1.0 annot-version=v1.0 MKGIILPKRYLIVILTFISTCVCYIERVGFSIAYTVAADAAGVNESSKGVILSTFYYGYACSQVPGGWAAQRIGGRKVLLLSFVLWSSTCFLVPLDPNRV TVMVLARLLVGVAQGFIFPSIHTVLAQWVPPHERSRSVSLTTSGMYLGAAMGMLILPSLVKFKGPQSVFVAEAVLGILWCLLWFKYASDPPRSEHPKATA AGFGESLLPLKASQKVKVENGVSSSRTAQIPWKKILLSLPVWAIVVNNFTFHYALYVLMNWLPTYFEQGLQLSLQEMGSSKMMPYLNMFLFSNIGGVAAD HLITKRIMSVTRTRKVLNTIGFIVAAFALMALPMFRTSDGAVFCSSIALGFLALGRAGFAVNHMDIAPRYAGIVMGVSNTAGTLAGIVGVDLTGKLLEAA KLAYSDLSSPESWRVVFCIPGLLCIFSSVVFLLFSSGERIFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10013836 [exp]	0	1
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10004749 [exp]	3.7	0.8384
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	6.0	0.8203
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10018554 [exp]	8.5	0.8028
AT3G48810			Pentatricopeptide repeat (PPR)...		Lus10009023 [exp]	11.0	0.7842
AT1G53210			sodium/calcium exchanger famil...		Lus10042848 [exp]	13.4	0.7556
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Lus10041383 [exp]	14.5	0.7355
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10001588 [exp]	15.0	0.7222
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Lus10014962 [exp]	18.0	0.7782
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10002801 [exp]	18.2	0.7521
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10015821 [exp]	22.3	0.7579

Compare expression of checked genes

Lus10013836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.