Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35290 983 / 0 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G17260 965 / 0 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT1G42540 878 / 0 ATGLR3.3 glutamate receptor 3.3 (.1) AT1G05200 844 / 0 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT3G51480 842 / 0 ATGLR3.6 glutamate receptor 3.6 (.1) AT2G32390 776 / 0 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT2G32400 658 / 0 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT2G29100 422 / 1e-132 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29110 414 / 2e-129 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29120 405 / 5e-126 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026552 [exp] 1771 / 0 AT4G35290 1025 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10026553 [exp] 1339 / 0 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10013838 [exp] 1100 / 0 AT1G42540 859 / 0.0 glutamate receptor 3.3 (.1) Lus10012245 [exp] 899 / 0 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10035980 [exp] 868 / 0 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10027171 [exp] 813 / 0 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10039671 [exp] 806 / 0 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10016031 [exp] 805 / 0 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10031560 [exp] 747 / 0 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G168300 [exp] 1123 / 0 AT4G35290 1127 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Potri.005G102700 [exp] 920 / 0 AT3G51480 1169 / 0.0 glutamate receptor 3.6 (.1) Potri.005G253800 [exp] 897 / 0 AT1G42540 1180 / 0.0 glutamate receptor 3.3 (.1) Potri.002G007400 [exp] 896 / 0 AT1G42540 1178 / 0.0 glutamate receptor 3.3 (.1) Potri.014G152200 [exp] 847 / 0 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.002G230000 [exp] 840 / 0 AT1G05200 1198 / 0.0 glutamate receptor 3.4 (.1.2) Potri.005G102600 [exp] 823 / 0 AT3G51480 1012 / 0.0 glutamate receptor 3.6 (.1) Potri.002G229900 [exp] 756 / 0 AT2G32400 955 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Potri.018G013200 [exp] 445 / 8e-141 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 441 / 3e-139 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10013837 pacid=23159515 polypeptide=Lus10013837 locus=Lus10013837.g ID=Lus10013837.BGIv1.0 annot-version=v1.0 ATGAGTTGGGTCTGGGTTATTTCGATCTTGGTAATGTGCGTCATGCCATTGTCACAAGGCTATGACACAGTGAAGCTTGGAGCTATTTTCACATTCAGCA CCACCAACGGGAGAGTCTCGAAGATTGCCATGGAGGCTGCTCAGGATGACATAAATTCCGATCCCACCATTCTCGGTGGACGGAAGCTGTCTATAACGAT GCACGATTCCAACTTCAGTGGATTCCTCGGCTTTGTTGGTGCTTTACGCTTTATGGAGACTGATACTGTTGCCATCATCGGTCCACAATCTTCTGTAATG GCTCGTATTCTTTCGCACATCACAAACGAACTTCATATTCCTCTCTTGTCATTTACAGCTCTGGACCCGACCATGTCTCCCAGGCAATACCCTTATTTTA TCCAGACAGCTCCAACCGATCTTTACATGGATGCAGCCCTTGCGGATATAATTAGTTACTATCGTTGGCCGGAGGTGATAGTCATTTACGACGAAGAAGA TCAGCTCCGGAATGGGATGGACATGCTGCATCGTTTGCTTCTAGAGAGGCGCAGCAAGATTTCCTACAAAGCAGCCATTTCCTTTTCTGCAACCAGGAGT GAGGTTCAAGAACTGCTAAATAAGCTTTTGAGCATGAAATCTTGTGTGGTTATTGTCTATACTCATACTGCAAGCGGCTTGTTGGTTTTCGATGTGGCCC GGAGTCTTGGCATGATAAGGGAAGGATATGTTTGGATAGCTGCTACTTGGCTGTCAAATATATTGGACTCGGATCCACTTGTTGCACATAATGGCACTTT CTTCCATGGAGTACTTACAATTAGACCGCACACTCCTGATACGAAAAAGAAAAGGGATTTCATGCAGCGTTGGGACCATCTCAGCAATGAATCCGTTGGG CTGAATCCATGCGGTCTATACGCCTACGATACTGTCTGGATGATTGCTCGTGCTGTGAGATTGTTTCTGTATCAAGGTAACAACATTTCGTTCTCTGATC ACACGACACTGAATGATCTTAGCCGGGGCACTTTGAATCTCAAAGCTTTAAGCAAGTTTGAGGGAGGAGAAAAGCTGAGAAACAACATATTGGAAACGAA TATGAACGGTGTGACTGGACCTTTTCGGTTTAATCCCGACCGGTCGGTTTGGCACCCTTCCTATGATATCATTAATGTTGTCAATGGTGTTTCTCAGGAC ATAGGATTCTGGTCCAATTACTCCGGGCTGTCTGTTGTTCCTCCAGAGACATTATATGGGAAACCACAAAACCGTTCGAGTTCGAATCAGCATCTTTCGA CTGTGGTGTGGCCAGGAGGAGGGAAGGTTGTGCCTCGTGGGTGGGTGTTTCCTCACAATGGGAAGCCATTGAGGGTTGGAGTCCCGAATAAGAGTATTTT TCGGAGAATCGTTTCAGCAGATAATGGAACTAATGCAGTTCATGGATATTGCATAGATGTCTTCCTTGCTGCCATAAGATTGCTTCCTTATAAACTTCCC TATGAGTTCATTCCTTTTGGTGATGGTCGCAGGAACCCCAATTATTCTCAACTTGTAAATGAGATTCCAGCAGGGGTATTCGATGTTGTTGTCGGCGACA TTTCGATTGTGACAGACAGGACAAAGGTTGTGGATTTCACTCAGCCGTTCATAGAGTCAGGGCTGGTTGTTGTAGCTCCTGTGAGGAAGCTGAATTCAGG TGCGTGGTCATTCTTGCTGCCATTCACTCCTTCAATGTGGGGCATCCTAGGGTTTTTCTTCCTCATTGTGGGAGCAGTTGTTTGGCTTCTTGAGCACAGG AGGAATGACGAATTCAGGGGGCCACCCAGACATCAGTTTGTAACGGTTCTCTGGTTTAGCTTCTCCACTTTGTTCATGGCCCATAGGGAAAACGTAGAGA GCCCTCTGGGAAGGTTTGTGCTGATAATCTGGCTGTTCGTAATCCTAATAGTCAACTCTAGCTACACAGCCAGCCTGACATCCATCCTAACAGTTCAACA GATGGCCTCACCCATAAGTGGGATTGAATCCTTGGTATCTGCTAATGTAGCCATAGGCTACCAAGTTGGGTCCTTTTCAGGAAAGTACTTGAGTGACGAA CTCAACATTCCCAGGAACAGGTTGATCCCTTTGGGGTCCCAAAAGGAGTTTGCACGTGCGCTTTCGAACGGGACTGTTGCTGCAATAGTCGAAGAAAAGC CCTACATTGATCTTTTCCTTGCCAATCATTGCAAGTTCTCCATACGAGGAGATGAGTTCACCAAGAGCAGCTGGGGATTCGCATTTATGAAGGACTCACC GATAGCAGAGGACATGTCAACGGCTATACTGGGACTGTCGGAGAAGGGGGAGCTGGAGAGGATAGGGAAGAAATGGCTGTCGAAGAAGCTGCATTGTCGA GTTGAAAGCGATCCCTCGGATCAATTGGAGCTGGAGAGCTTCACGGGACTGTTCCTTGTGTGTGGGACCGTGTGCTTTGTGGCGCTGCTCATCTATCTGT GCTCTACTGTCCGGCAGTTCAGACAACACTGCCCAGTCGAGGCTTGCGAATTCAACCACCATGAACCTGGTGGTTCCTCATCATTATCTACTACTACCAC CACGAGTGGTGGTAGTAGTAGTAAGAGGAGGAGGATGAGGTATGGGGTGAAACGGGTACAGAGGTTCATGTCGTATGTAGATGACAAGAAGGATGTTTGG AACAACAACAACACCACGAAAGCGAAGCGGAAGCGCGGGGAGGATGATGAGGATGATACGGTTATGTCAATGCCGTCGTATGAAGTTGGGAGGAAGGATG TACTAGTTTCAGAGCAGCAGCAGCAGGGAAGACATGTTCGTTTCATCGGTTACCGTTCCAGGTAG
AA sequence Show only first row Show all	>Lus10013837 pacid=23159515 polypeptide=Lus10013837 locus=Lus10013837.g ID=Lus10013837.BGIv1.0 annot-version=v1.0 MSWVWVISILVMCVMPLSQGYDTVKLGAIFTFSTTNGRVSKIAMEAAQDDINSDPTILGGRKLSITMHDSNFSGFLGFVGALRFMETDTVAIIGPQSSVM ARILSHITNELHIPLLSFTALDPTMSPRQYPYFIQTAPTDLYMDAALADIISYYRWPEVIVIYDEEDQLRNGMDMLHRLLLERRSKISYKAAISFSATRS EVQELLNKLLSMKSCVVIVYTHTASGLLVFDVARSLGMIREGYVWIAATWLSNILDSDPLVAHNGTFFHGVLTIRPHTPDTKKKRDFMQRWDHLSNESVG LNPCGLYAYDTVWMIARAVRLFLYQGNNISFSDHTTLNDLSRGTLNLKALSKFEGGEKLRNNILETNMNGVTGPFRFNPDRSVWHPSYDIINVVNGVSQD IGFWSNYSGLSVVPPETLYGKPQNRSSSNQHLSTVVWPGGGKVVPRGWVFPHNGKPLRVGVPNKSIFRRIVSADNGTNAVHGYCIDVFLAAIRLLPYKLP YEFIPFGDGRRNPNYSQLVNEIPAGVFDVVVGDISIVTDRTKVVDFTQPFIESGLVVVAPVRKLNSGAWSFLLPFTPSMWGILGFFFLIVGAVVWLLEHR RNDEFRGPPRHQFVTVLWFSFSTLFMAHRENVESPLGRFVLIIWLFVILIVNSSYTASLTSILTVQQMASPISGIESLVSANVAIGYQVGSFSGKYLSDE LNIPRNRLIPLGSQKEFARALSNGTVAAIVEEKPYIDLFLANHCKFSIRGDEFTKSSWGFAFMKDSPIAEDMSTAILGLSEKGELERIGKKWLSKKLHCR VESDPSDQLELESFTGLFLVCGTVCFVALLIYLCSTVRQFRQHCPVEACEFNHHEPGGSSSLSTTTTTSGGSSSKRRRMRYGVKRVQRFMSYVDDKKDVW NNNNTTKAKRKRGEDDEDDTVMSMPSYEVGRKDVLVSEQQQQGRHVRFIGYRSR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10013837 [exp]	0	1
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10012245 [exp]	4.9	0.7226
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009641 [exp]	12.4	0.6075
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013303 [exp]	12.7	0.5821
AT1G73850			Protein of unknown function (D...		Lus10038936 [exp]	16.4	0.6685
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10007327 [exp]	18.6	0.6314
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10008826 [exp]	19.7	0.6241
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10042478 [exp]	30.7	0.6366
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Lus10037846 [exp]	31.5	0.6183
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024771 [exp]	35.2	0.5340
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Lus10001799 [exp]	36.1	0.6067

Compare expression of checked genes

Lus10013837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.