Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17260 860 / 0 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT1G42540 748 / 0 ATGLR3.3 glutamate receptor 3.3 (.1) AT1G05200 723 / 0 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT2G32390 642 / 0 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT4G35290 470 / 5e-152 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT3G51480 409 / 5e-129 ATGLR3.6 glutamate receptor 3.6 (.1) AT2G29100 363 / 3e-111 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29120 361 / 2e-110 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 350 / 2e-106 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G32400 324 / 5e-97 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026553 [exp] 1479 / 0 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10026552 [exp] 1153 / 0 AT4G35290 1025 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10013837 [exp] 1144 / 0 AT4G35290 1016 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10012245 [exp] 796 / 0 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10027171 [exp] 707 / 0 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10035980 [exp] 698 / 0 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10039671 [exp] 695 / 0 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10027170 [exp] 602 / 0 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10039672 [exp] 600 / 0 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G168300 [exp] 1027 / 0 AT4G35290 1127 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Potri.014G152200 [exp] 762 / 0 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.002G230000 [exp] 754 / 0 AT1G05200 1198 / 0.0 glutamate receptor 3.4 (.1.2) Potri.005G253800 [exp] 746 / 0 AT1G42540 1180 / 0.0 glutamate receptor 3.3 (.1) Potri.005G102700 [exp] 447 / 7e-143 AT3G51480 1169 / 0.0 glutamate receptor 3.6 (.1) Potri.002G007400 [exp] 446 / 1e-142 AT1G42540 1178 / 0.0 glutamate receptor 3.3 (.1) Potri.005G102600 [exp] 409 / 8e-129 AT3G51480 1012 / 0.0 glutamate receptor 3.6 (.1) Potri.018G096500 [exp] 394 / 7e-123 AT2G29110 662 / 0.0 glutamate receptor 2.8 (.1) Potri.006G172100 [exp] 387 / 1e-119 AT2G29110 724 / 0.0 glutamate receptor 2.8 (.1) Potri.018G012600 [exp] 384 / 7e-119 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10013838 pacid=23159467 polypeptide=Lus10013838 locus=Lus10013838.g ID=Lus10013838.BGIv1.0 annot-version=v1.0 ATGGATTGTCTCGGTGTTAGTTATGTGTATCACTACCACATTGTCACAAGCACTGGCACCGTGAAGGTTGGAGCTATTTTCACATTCAGCACCATCAACG GTAAAGTGTCGAAGATCGCCATGGAGGCTGCTGAGAATGACATAAATGCCGATCCTACCATTCTTGGAGGATGGAAACTGTCTTTAATAATGCACGATTC CAACTTCAGTGGATTCCCTGACTTTGTTGGAGGTACGGTTTATATTTCATTAAAAGTTTTGGAATTTCCTTCCATACATCGATACTTTTCTTACCTAAGC TACATGACTGCAGCTTTACACTTCATGGAGATCGATACTGTTGCCATAATCGGTCCACAATCTTCTGTAATGGCCCGTGTTCTTTCACAAATCACGAAAG AACTCCAGACTCCTCTCTTGTCGTTTACTGCTTTAGATCCCACCATCTCTCCCTTGCAATACCCTTATTTTATCCAGACAGCTCCAAATGATCTTTTCAT GGTTACAGCTATCGCTGACGTAGTTAGGTACTATCAATGGCCGGAGGTGATAGCTATATACAACGATGAGGATCAGGGCCGGAATGGGATGAACATGCTG GATGATATGCTGCTGGAGAAAGGCAGCAAGCTTTCCCACAAAGCAGCAATTCCTGTGGATGTAACTAGGAGTGAAGTCCAAACACTGCTAACCAAGTTTT TGAGTATGGAATCTTGTGTGGTTATCGTCTATACCTATACTCCAAGTGGCTTGTTGGTTTTTAATGTGGCCCGGAGTCTTGGTATGGTGAGGGAAGGGTA CGTTTGGATAGCTACAACTTGGCTTTCAAATGTATTGGACTCGGGTTCACTCGATGCACAGAATCTCATCCCCTTCCAAGGGGCTATCACGTTTCGACCA CACACTCCTTATTCCAAACGAAAAAGGGACTTCATTATCCGGTGGGACCATCTCAGCAATGGCACTGTTGGTCTGAATCCTTGTGGTCTATACGCCTATG ATACTGTCTGGATGATTGCCCGTGCTGTGAGATTGTTTCTGGATCAAGGCAACACCATCTCATTCTCTGATCACTCAAAACTGAATGATCTAAGCCGGGG GACTTTGAATCTCAAAGCTTTGAGCAAATTTGATGGAGGGGAAATACTGAGAGACAACATACTGCAGGCAAATATGAATGGCCTGACTGGACCAATTCGG TTTAATCCAGACAGGTCGGTTTGGCATCCTTCCTATGATGTCATTAATGTTTTCAAAGGTGGTTCCCAGCTGATAGGATACTGGTCCAATTACTCTGGAC TCTCTGTCGTAACTCCAGAAACATTATATGGATTCCCGCCAAACTGCTCCAGTTCAAACCAACATCTGTCTACTGTAGTGTGGCCTGGAGGAGGAAAAAT TGTGCCACGTGGGTGGGTTTTCCCCCACAATGGAATGCCGTTCAGGATTGAGGTCTTTGATGCTGTTGTTGGTGACATTTCAATTGTGAGAGACAGAACA AAGATTGTTGATTTCACTCAGCCATTCACAGAGTCAGGACTGGTTGTGGTAGCTCCTGTTAGGAAGCAGAAATCAAGTGTGTCGGCGTTCTTGCGGCCAT TCACTCTTTCAATGTGGGGTATCACAGTGCTGTTCTTTGTCATTGTTGGATCAGTTGTTTGGCTTCTAGAGCACAGGACTAATGATGAATTCAGAGGGCC ACCTAAACAACAGTTTGTGACAGTTCTCTGGTTTAGCTTCTCCACTCTTTTCATGGCCCATCGAGAAAACGTAGATAGCACTCTGGGTAGGTTTGTGCTG ATAATCTGGCTCTTTGTAAGCCTAATAGTCAATTCCAGCTACACTGCCAGCCTGACTTCCATCCTCACAGTGGAGCAGCTGGCCTCACCCATAACTGGAA TTGATTCCTTGATAGCTGGAAATGTAGCTATAGGATACCAGGTTGGTTCCTTCGCCGAAAACTATTTGAGAGATGAACTCAACATTGCTCGGAGCAGACT GGTTCCGTTGGGTTCTCCTGCCGAGTATGCTCGTGCACTCTCAAAGGGAACTGTTGCAGCAATCGTTGATGAAAAGCGTTATGTTGACATCTTCCTTGCC GATCACTGCAAGTTCTCGATACAAGGATTGGAGTTCACTAAAAGAGGCTGGGGATTCGCATTTAGGAAGGATTCCCCGATAGCTGTGGACATGTCAACGG CAATACTGAGACTGTCAGAGAACGGCGAGCTACAGAGACTAGAGAACAAGTGGCTGTCAAGGAAGCCGCATTGCCAGGTTCAGAACGAGTTGTCGGATCA GTTGGAGCTTGAGAACTTCTTGGGGCTGTTTATGGTGTGTGGGATTGCGTGTTTATTGGCGCTGGTGATCTACTTCTGCTTCACAGTTCACCAGTTCAAC AACCAACAGTCCCCAGTTGACGGTGGCAGTCGCGAAGTTCAAGGCGGTGGTTCGTCGTCACCTTGTAAGAGGAGTAAAGGTAAAATGTGTGGGATGAGGC GGATACGGAGGTTCATGTCGTACGCGGATGGAAAGATGGATGCTTGGAAGATGAAACTGAAGAGAAAACGTGGGGAGGATGATGATGAAGCCGCCGTCGC CATACAATGA
AA sequence Show only first row Show all	>Lus10013838 pacid=23159467 polypeptide=Lus10013838 locus=Lus10013838.g ID=Lus10013838.BGIv1.0 annot-version=v1.0 MDCLGVSYVYHYHIVTSTGTVKVGAIFTFSTINGKVSKIAMEAAENDINADPTILGGWKLSLIMHDSNFSGFPDFVGGTVYISLKVLEFPSIHRYFSYLS YMTAALHFMEIDTVAIIGPQSSVMARVLSQITKELQTPLLSFTALDPTISPLQYPYFIQTAPNDLFMVTAIADVVRYYQWPEVIAIYNDEDQGRNGMNML DDMLLEKGSKLSHKAAIPVDVTRSEVQTLLTKFLSMESCVVIVYTYTPSGLLVFNVARSLGMVREGYVWIATTWLSNVLDSGSLDAQNLIPFQGAITFRP HTPYSKRKRDFIIRWDHLSNGTVGLNPCGLYAYDTVWMIARAVRLFLDQGNTISFSDHSKLNDLSRGTLNLKALSKFDGGEILRDNILQANMNGLTGPIR FNPDRSVWHPSYDVINVFKGGSQLIGYWSNYSGLSVVTPETLYGFPPNCSSSNQHLSTVVWPGGGKIVPRGWVFPHNGMPFRIEVFDAVVGDISIVRDRT KIVDFTQPFTESGLVVVAPVRKQKSSVSAFLRPFTLSMWGITVLFFVIVGSVVWLLEHRTNDEFRGPPKQQFVTVLWFSFSTLFMAHRENVDSTLGRFVL IIWLFVSLIVNSSYTASLTSILTVEQLASPITGIDSLIAGNVAIGYQVGSFAENYLRDELNIARSRLVPLGSPAEYARALSKGTVAAIVDEKRYVDIFLA DHCKFSIQGLEFTKRGWGFAFRKDSPIAVDMSTAILRLSENGELQRLENKWLSRKPHCQVQNELSDQLELENFLGLFMVCGIACLLALVIYFCFTVHQFN NQQSPVDGGSREVQGGGSSSPCKRSKGKMCGMRRIRRFMSYADGKMDAWKMKLKRKRGEDDDEAAVAIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10013838 [exp]	0	1
AT1G27510			Protein of unknown function (D...		Lus10027696 [exp]	4.9	0.8426
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10018061 [exp]	7.0	0.7688
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10005927 [exp]	8.7	0.7833
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Lus10001152 [exp]	11.0	0.7023
AT2G33830			Dormancy/auxin associated fami...		Lus10025446 [exp]	11.2	0.7855
AT2G20725			CAAX amino terminal protease f...		Lus10039818 [exp]	12.4	0.7476
AT1G26180			unknown protein		Lus10031917 [exp]	13.3	0.7536
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	14.0	0.8042
AT3G01310			Phosphoglycerate mutase-like f...		Lus10015343 [exp]	14.4	0.7678
AT1G35340			ATP-dependent protease La (LON...		Lus10008251 [exp]	20.3	0.7833

Compare expression of checked genes

Lus10013838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.