Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17270 469 / 2e-167 PHT3;3 phosphate transporter 3;3 (.1) AT3G48850 322 / 1e-108 PHT3;2 phosphate transporter 3;2 (.1) AT5G14040 322 / 2e-108 PHT3;1 phosphate transporter 3;1 (.1) AT1G07030 82 / 2e-17 Mitochondrial substrate carrier family protein (.1) AT2G30160 79 / 2e-16 Mitochondrial substrate carrier family protein (.1) AT4G01100 75 / 6e-15 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G51050 71 / 3e-13 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT3G53940 70 / 3e-13 Mitochondrial substrate carrier family protein (.1) AT3G20240 69 / 6e-13 Mitochondrial substrate carrier family protein (.1) AT5G66380 67 / 3e-12 ATFOLT1 folate transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026554 [exp] 670 / 0 AT2G17270 472 / 8e-169 phosphate transporter 3;3 (.1) Lus10035975 [exp] 389 / 4e-133 AT2G17270 398 / 7e-137 phosphate transporter 3;3 (.1) Lus10041519 [exp] 321 / 3e-108 AT5G14040 586 / 0.0 phosphate transporter 3;1 (.1) Lus10012574 [exp] 318 / 4e-107 AT5G14040 580 / 0.0 phosphate transporter 3;1 (.1) Lus10016720 [exp] 313 / 2e-105 AT5G14040 568 / 0.0 phosphate transporter 3;1 (.1) Lus10036014 [exp] 308 / 2e-103 AT5G14040 572 / 0.0 phosphate transporter 3;1 (.1) Lus10042258 [exp] 77 / 1e-15 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 76 / 3e-15 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 69 / 1e-12 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G207200 [exp] 499 / 2e-179 AT2G17270 479 / 3e-172 phosphate transporter 3;3 (.1) Potri.005G098800 [exp] 466 / 2e-166 AT2G17270 447 / 2e-159 phosphate transporter 3;3 (.1) Potri.015G104400 [exp] 311 / 7e-105 AT5G14040 489 / 2e-174 phosphate transporter 3;1 (.1) Potri.017G060800 [exp] 309 / 2e-103 AT5G14040 542 / 0.0 phosphate transporter 3;1 (.1) Potri.012G105100 [exp] 304 / 1e-101 AT5G14040 499 / 4e-178 phosphate transporter 3;1 (.1) Potri.001G322300 [exp] 300 / 2e-100 AT5G14040 533 / 0.0 phosphate transporter 3;1 (.1) Potri.009G077600 [exp] 82 / 2e-17 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.001G282400 [exp] 79 / 2e-16 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.002G168100 [exp] 79 / 3e-16 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 76 / 3e-15 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10013839 pacid=23159445 polypeptide=Lus10013839 locus=Lus10013839.g ID=Lus10013839.BGIv1.0 annot-version=v1.0 ATGTGGAAGACGCAGGCAGCTGCTGCTGACTCCGGCGCCGTCAGAATATCAGAGATTGCTCCCCATGTAGAGAAGGCCGATAATGAGGAGACAACGAGAG GAAGGGTCCTAATTCGTCGCCGTTTTAATGGGGAGGAAGGCTTGTCTTCTCCTGGCCTTTCCTACTATTGGATCTGTGCTCTTGGAGGAATGCTCGGTGC TGGAACCACCCACCTTGCCATCACTCCTCTTGATGTCCTCAAAGTCCATATGCAGGTGAATCCAATCAAGTACAACAGCATTCTGTCAGGATTCTCCACC CTATGGAAAGAGCAAGGCCCTTCCTCTCTTTGTAGAGGTTGGTCCGGTAAGCTGTTCGGATATGGTGCTCAGGGAGGCTGCAAATTCGGCCTTTACGAAT ACTTCAAGAGAGCTTACTCGGATATCTTGCTACATCAAGGCAGGACCACCATCTTCTTTCTCAGCAGTGCTTCAGCACAAATATTCGCTGATGTTGCTCT CTGCCCGTTTGAAGCTGTCAAGATCCGTGTCCAAACGCAGCCTCATTTCGCCAAGGGATTGACTGATGGATTCCCCAAAATTTACAGGACTGAAGGACTT GCTGGCTTTTATCGCGGGCTTTTTCCACTGTGGGGCCGCAATCTTCCATTCTCTATGGTGATGTTTTCAACTTTTGAGCACTCAGTGGATGTGATATACC ACCACATTATCCAAAGGCGGAAGGAGGATTGCTCAACACTTCAGCAGCTCGGGGTGACTTGTTTAGCAGGGTACACAGCTGGGGCAGTGGGAACTGTTAT ATCCACACCAGCTGACAACATTGTCAGCTCTCTTTACAACGGGAAAGCAGAATCTGTGCTCGAGGCAGTGAGGAGGATTGGGGTGGCTAATCTTTTCACG CGCAGTCTTCCGATTCGCATTGCTCTTGTTGGACCTGTAGTCACTTTGCAGTGGTTCTTTTACGACACGATCAAAGTACTCAACGGGCTGCCTACCAGTG GCGGGGTGAGCCAGGAACATGAAGATGGGAGCATATCTGCCTAA
AA sequence Show only first row Show all	>Lus10013839 pacid=23159445 polypeptide=Lus10013839 locus=Lus10013839.g ID=Lus10013839.BGIv1.0 annot-version=v1.0 MWKTQAAAADSGAVRISEIAPHVEKADNEETTRGRVLIRRRFNGEEGLSSPGLSYYWICALGGMLGAGTTHLAITPLDVLKVHMQVNPIKYNSILSGFST LWKEQGPSSLCRGWSGKLFGYGAQGGCKFGLYEYFKRAYSDILLHQGRTTIFFLSSASAQIFADVALCPFEAVKIRVQTQPHFAKGLTDGFPKIYRTEGL AGFYRGLFPLWGRNLPFSMVMFSTFEHSVDVIYHHIIQRRKEDCSTLQQLGVTCLAGYTAGAVGTVISTPADNIVSSLYNGKAESVLEAVRRIGVANLFT RSLPIRIALVGPVVTLQWFFYDTIKVLNGLPTSGGVSQEHEDGSISA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10013839 [exp]	0	1
AT5G47330			alpha/beta-Hydrolases superfam...		Lus10004757 [exp]	3.5	0.7606
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10026554 [exp]	4.7	0.8327
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Lus10041402 [exp]	6.0	0.7326
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10042669 [exp]	7.5	0.7569
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10036539 [exp]	27.5	0.7490
AT4G36010			Pathogenesis-related thaumatin...		Lus10041901 [exp]	27.9	0.7244
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10016790 [exp]	33.3	0.7385
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10016595 [exp]	33.8	0.7550
AT1G45207			Remorin family protein (.2)		Lus10005708 [exp]	38.0	0.7220
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10039741 [exp]	39.3	0.6212

Compare expression of checked genes

Lus10013839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.