Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65560 865 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G07290 458 / 5e-147 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77340 345 / 8e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 296 / 2e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 283 / 1e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 287 / 3e-84 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 284 / 3e-84 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62590 283 / 7e-84 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62670 280 / 1e-82 RPF2 rna processing factor 2 (.1) AT3G06920 285 / 2e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026558 [exp] 1763 / 0 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 543 / 2e-177 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 540 / 4e-173 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 324 / 3e-96 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 317 / 1e-93 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010407 [exp] 303 / 7e-89 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 301 / 1e-88 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 295 / 1e-86 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10007468 [exp] 284 / 3e-83 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G124900 [exp] 1140 / 0 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 332 / 4e-99 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 322 / 6e-98 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 305 / 2e-92 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 310 / 3e-90 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 299 / 4e-90 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G098400 [exp] 303 / 1e-89 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 298 / 1e-89 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 296 / 5e-89 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 293 / 5e-88 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013841 pacid=23159487 polypeptide=Lus10013841 locus=Lus10013841.g ID=Lus10013841.BGIv1.0 annot-version=v1.0 ATGCACGTCGGCCCCCCTCCACCCAATATGAACAAATCTCCGGCGGCTTCTATCGTCGCTGCATCCCAAGTTGTGTCCTCTTCCTTTCCTACCCTTTCAT TCAACTCTTCCTTCCGTCACATCGTCAACCGATTGCTATCCGCTTCCTCCACCTCGGCCGCCGCCGCTCCTATTCCTTCCTCGGGCAGCGACTCGGCAGA CCGACTAGATCTTCCATCTCAGATTCTCGCAGTCCTGTCTCTTCCTAATTGGCAGAAGCACCATTCCATCGGTAAGCTCATCTCGGCCGTTTCTCCTTCT CACGTCTCGTCTCTTCTCCGGGACAACCCTAATCTCCCTCCGCAGATTTCCCTAGACTTCTTCAATTTCGTTGCTCGGAGGCGCGGGTTCAGGCATGATG TTATGTCTCATTCGTTGCTTTTGAATATTCTGATTCGCAATAAGTTTTTTGGCGTTGCGGAGAAAGTTCGGATTTCAATGATCAAAGTTTGCAGTGTGGT TGATGAGGTTCCGCTGGCTTTGAGTTGCCTGCGAGAGATGAATAAAGGGGAAGGAGAGTTTGAATTTAAACTCACTGTTAGGACTTACAATGAGCTGCTT ATGATGTTAGCGAGGTTTTTGATGATTGATGAGATGAAGAAAGTTTACAGTGAGATGCTCGACGATTTCGTTTCGCCAAACATATACACATTTAATACGA TGGTTAATGTGTATTGTAAGGTCGGTAAGGTTGTCGAGGCTGATGTGTACGTGAGTAAGATTTTGCAGGCTGGTTTGAGTCCTGACACCTTTACTTACAC TTCGTTAATTCTGGGGCATTGCAGGAATAATGATGTGAGTAGTGCATTTAGAATATTTAACACGATGCAGAAGAAAGGTTGTAAAAGAAATGCAGTTTCT TACACTGTTCTCATACATGGACTTTGTGAGGCTGGAAGGGTTGATGAGGGTATTGGTTTATATAAGAAGATGGGTGAAGATAACTGTCTTCCTACTGTTC GAACTTACACGGTTATAATTGATGCATTACTTGCCAATGGTAGGCGATCAGAAGCAATGGAGTTTTTTAGCAAAATGAAGGAGACAGGGTGTCAACCGAA TGTCCATACTTACACTGTTTTGATTGATGCCATGTGTAAAGAAAAGAAGCTGGAGCAGAGTAGGCAAATGCTAGATCAGCTCACAGAGAAAGGGCTGATT CCCAGTGCGGCTACTTATAATGCATTAATTCAAGGTTATTGCAAAGAGGGTAAGATGGATGCTGCAATGGGAATCTTTGATATGATGAAGGCGAACAGTT GTAAGCCAAATGAACGTACGTATAATGCGTTGATATATGGATTCTGCGAGACGAAATGTGTGCACAAGGCAATGTCACTATTACAAGGTATGGTTTCTTC TAAGCTAACCCCTAGCCTTGTTACCTATAATGAGTTGATCCATGGGCAGTGTAAAGTAGGCGATTTAGATAGTGCATTCAAATTGCTTGATTTGATGACC GAGAATAAGGTGGTTCCAGATCATTGGACATATGGAGTTTTGGTAGATTCACTTTGTAAAAAGAATAGGGTAGAGGAGGCTCGTCTTTTGTTTGATAGCC TGAAGGAGAAAGGGATACAGCCGAATGAAGTAATTTACACTGCATTGATTGATGGATTTTGTAAAGCTGGAAAAGTGGATGATGGTTGTTCTTTGCTGGA AAAGATGCAAAATGAAAATTGTTTGCCAAACTCCTCCACATACAATGCCTTGATAAATGGATTATGCAGCGAGAGAAAGTTGAAAAAAGCTTTGCAGTTG GTGGCAGATATGGAAAAAGTAGGTTTAAAGCCCACTGTTCAGACATACACTATCCTTATTAAAGAAATGTTGAAAGAAGGTGATTTCGACCATTCATATA AGGTTATGGATCATATGATTTCCTTGGGATGCAAACCTGACGCTTATACATATACTGCTTTCATCCATGCATACTGTAGCATAGACAACCTCAAAGAAGC AGAGGACACGATGACTAGGATGCTTGAGATGACTAGGATGTTTGATGCAGGAATAATGCCAGATTCCTTGCCTTATACATTTTTAATTGAATCTTATGGC CGATTGGGATTGACAAATGAAGCATTTAGTGTATTGAAGCGCATGTTTGACAATGGATGTGATCCTTCTCACTATTCTTATGCTTTTTTAATCAAGCATC TCTCCAAAGAAGAGTTCGTCAAAGGAAACCTCAACTTCACTGGATTTGATATGGTGAATAATGCACATTTTTTGGATGTTGCTAATGTGTGGAAGGTCAT GAAGTATGAGACTGCTTTATTTCTTCTTGAGAAAATGACAGCGTATGGATGTCCCCCCACTGTTAGCACTTACAGCAAGCTCATTATTGGACTTTGTAAG GAAAGACGGCTGAACGAAGCTCAAAGGCTACTCGGTCATATGAATAGCAGAGGTCTATTTCCTAGTGAAGATATCAGTAATTCTCTTCTCTATTGTTGCT GTGAGATGGAAAGGTATGCAGATGCGTTAAAACTATTGGATACTATGATGACGCATGGCCATTTACCAGCATTGGATTCTTTCCGATTGATAATGTGTGG GTTGTATCTTGAAGGGAATAGCTATAAGGCTAGGGAGGCCTTTTCCTATTTGCTTCGTTTCCAGTACAATTATGATGAAGTGGCTTGGAAAGTTTTGATT GAAGGTTTGCTCAAAAGGGGCCTTGTTGATGGATGTTCTGAATTGTTGAGCATCATGGAGAAGAGGGGTTGTGATATTCATCCTAAAACTTACACTACGT TAATAGAGAGACTTGATGTGTCATGA
AA sequence Show only first row Show all	>Lus10013841 pacid=23159487 polypeptide=Lus10013841 locus=Lus10013841.g ID=Lus10013841.BGIv1.0 annot-version=v1.0 MHVGPPPPNMNKSPAASIVAASQVVSSSFPTLSFNSSFRHIVNRLLSASSTSAAAAPIPSSGSDSADRLDLPSQILAVLSLPNWQKHHSIGKLISAVSPS HVSSLLRDNPNLPPQISLDFFNFVARRRGFRHDVMSHSLLLNILIRNKFFGVAEKVRISMIKVCSVVDEVPLALSCLREMNKGEGEFEFKLTVRTYNELL MMLARFLMIDEMKKVYSEMLDDFVSPNIYTFNTMVNVYCKVGKVVEADVYVSKILQAGLSPDTFTYTSLILGHCRNNDVSSAFRIFNTMQKKGCKRNAVS YTVLIHGLCEAGRVDEGIGLYKKMGEDNCLPTVRTYTVIIDALLANGRRSEAMEFFSKMKETGCQPNVHTYTVLIDAMCKEKKLEQSRQMLDQLTEKGLI PSAATYNALIQGYCKEGKMDAAMGIFDMMKANSCKPNERTYNALIYGFCETKCVHKAMSLLQGMVSSKLTPSLVTYNELIHGQCKVGDLDSAFKLLDLMT ENKVVPDHWTYGVLVDSLCKKNRVEEARLLFDSLKEKGIQPNEVIYTALIDGFCKAGKVDDGCSLLEKMQNENCLPNSSTYNALINGLCSERKLKKALQL VADMEKVGLKPTVQTYTILIKEMLKEGDFDHSYKVMDHMISLGCKPDAYTYTAFIHAYCSIDNLKEAEDTMTRMLEMTRMFDAGIMPDSLPYTFLIESYG RLGLTNEAFSVLKRMFDNGCDPSHYSYAFLIKHLSKEEFVKGNLNFTGFDMVNNAHFLDVANVWKVMKYETALFLLEKMTAYGCPPTVSTYSKLIIGLCK ERRLNEAQRLLGHMNSRGLFPSEDISNSLLYCCCEMERYADALKLLDTMMTHGHLPALDSFRLIMCGLYLEGNSYKAREAFSYLLRFQYNYDEVAWKVLI EGLLKRGLVDGCSELLSIMEKRGCDIHPKTYTTLIERLDVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10013841 [exp]	0	1
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10033928 [exp]	7.7	0.9099
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10024311 [exp]	13.3	0.8988
AT1G79540			Pentatricopeptide repeat (PPR)...		Lus10020852 [exp]	16.2	0.8859
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001101 [exp]	16.8	0.8808
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001415 [exp]	17.0	0.8994
AT3G58560			DNAse I-like superfamily prote...		Lus10016206 [exp]	23.1	0.8773
AT1G80960			F-box and Leucine Rich Repeat ...		Lus10028602 [exp]	28.8	0.8210
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Lus10021336 [exp]	31.2	0.8726
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10020299 [exp]	32.8	0.8596
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016882 [exp]	32.9	0.8841

Compare expression of checked genes

Lus10013841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.