Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17290 948 / 0 ATCPK6, ATCDPK3, CPK6 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) AT4G35310 941 / 0 CPK5, ATCPK5 calmodulin-domain protein kinase 5 (.1) AT4G38230 875 / 0 CPK26, ATCPK26 ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26, calcium-dependent protein kinase 26 (.1.2.3) AT3G10660 740 / 0 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT5G04870 735 / 0 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT2G38910 705 / 0 CPK20 calcium-dependent protein kinase 20 (.1) AT4G09570 705 / 0 CPK4, ATCPK4 calcium-dependent protein kinase 4 (.1) AT1G35670 704 / 0 CPK11, ATCDPK2, ATCPK11 calcium-dependent protein kinase 2 (.1) AT5G23580 658 / 0 ATCDPK9, CPK12, CDPK9, ATCPK12 CALCIUM-DEPENDENT PROTEIN KINASE 12, ARABIDOPSIS THALIANA CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9, calmodulin-like domain protein kinase 9 (.1) AT5G12180 646 / 0 CPK17 calcium-dependent protein kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026559 [exp] 1127 / 0 AT2G17290 952 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Lus10022986 [exp] 1011 / 0 AT4G35310 950 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10001384 [exp] 1009 / 0 AT4G35310 949 / 0.0 calmodulin-domain protein kinase 5 (.1) Lus10028862 [exp] 743 / 0 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10008958 [exp] 739 / 0 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10021248 [exp] 723 / 0 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10012285 [exp] 718 / 0 AT2G38910 884 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10015992 [exp] 717 / 0 AT2G38910 880 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10013603 [exp] 716 / 0 AT3G10660 803 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G207300 [exp] 1004 / 0 AT2G17290 969 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.009G168600 [exp] 993 / 0 AT2G17290 968 / 0.0 calcium dependent protein kinase 6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, Calcium-dependent protein kinase family protein (.1) Potri.010G244800 [exp] 758 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 751 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.016G066700 [exp] 733 / 0 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.019G083200 [exp] 725 / 0 AT4G09570 835 / 0.0 calcium-dependent protein kinase 4 (.1) Potri.006G200600 [exp] 724 / 0 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.T012800 [exp] 723 / 0 AT1G35670 795 / 0.0 calcium-dependent protein kinase 2 (.1) Potri.016G065700 [exp] 712 / 0 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.013G112500 [exp] 711 / 0 AT1G35670 815 / 0.0 calcium-dependent protein kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10013842 pacid=23159480 polypeptide=Lus10013842 locus=Lus10013842.g ID=Lus10013842.BGIv1.0 annot-version=v1.0 ATGGGCAACACATGCCGTGGATCTTTCAAAGGCAAATTTTATCAGGGCTACAGTCAGCCCGAGGATCTCTCCACAACTTCTAGGCACAATAACCCTACCT CCTCTCACTCTGATATTCATACGGATTCAATCAACAAGGAAAACCAACATTTACCCATTGTCATAATCCCTAAGGACATCACCATGAGGCGAACCGCTGA CAACCAAGCTTACTATGTTCTAGGCCACAGGCCGGCCAACATTCGCGACCTTTACAACTTGGGTCGCAAGTTGGGGCAGGGTCAATTCGGCACTACTTAT CTGTGCACTGATATCTCCACGGGGATCGAATATGCTTGCAAGTCCATATCCAAGAGGAAGCTCATTTCGAGGGAGGATGTGGACGATGTTCGTAGGGAGA TTCAGATTATGCACCATTTGGCTGGTCACAATAACATTGTCACCATCAAGGGTGCTTATGAGGATTCTTTGTATGTTCATATTGTCATGGAGCTTTGCTC TGGCGGGGAGTTGTTTGATAGGATCATCCAGAGAGGGCATTATAGTGAGAGGAAAGCCGCTGAGCTCACTAAGATCATTGCTGGTGTTGTCGAGGCGTGC CATTCTCTCGGGGTTATGCATCGAGATCTAAAGCCTGAGAATTTTTTGCTGGTTAATAAAGATGATGACTTCTCTCTCAAGGCCATTGATTTCGGACTCT CAGTGTTTTTCAAACCAGGTCAAATTTTCAGTGATGTTGTGGGAAGTCCATATTATGTTGCACCTGAGGTTCTTCTCAAGCTTTATGGACCTGAAGCTGA TGTATGGACAGCTGGGGTCATTCTGTATATATTGTTAAGTGGAGTGCCACCTTTCTGGGCGGAGACGCAACAAGGAATATTCGATGCAGTCTTGAAGGGA CATATTGACTTCGACTCGGATCCATGGCCTTTGATCTCGGAGAGTGCCAAAGATCTCATTCGCAGGATGCTCTGCTCCAGTCCTAAAGAACGTTTGACTG CTCATGAAGTGCTATGTCATCCTTGGATATGCGAAAACGGAGTTGCTCCTGATAGAGCCCTTGATACAGCTGTACTTACTCGCCTCAAGCAATTCTCAGC AATGAATAAGCTAAAGAAGATGGCTTTACGGGTGATAGCTGAAAGCCTTTCGGAAGAGGAGATAGCTGGTTTGAAAGAAATGTTCAAATCTATGGACACT GATAGCAGTGGTGCAATAACATTTGATGAACTTAAAGCAGGTTTGCGCAGATATGGTTCAACCATGAAGGATACAGAAATTCGTGATCTTATGGATGCGG CTGATGTTGATAACAGCGGTACCATCGACTACGGTGAATTCATAGCTGCTACGATCCATCTTAACAAATTAGAACGCGAGGAACATCTTGTTGCGGCGTT CCGGTATTTTGACAAGGATGGAAGTGGTTATATCACAGTGGATGAGCTTCAGCAAGCGTGTGCAGAGCATAACATGACTGATGTTTACATTGAAGATATA ATCAGCGAAGTTGATCAAGATAATGACGGAAGGATTGATTATGCGGAATTTGTCGCAATGATGCAAAAGGGGAATGCAGGAATTGGTAGACGGACTATGC GGAACAGTTTAAATTTGAGTATGAGGGATGCACCTGGTGCTCAGTAA
AA sequence Show only first row Show all	>Lus10013842 pacid=23159480 polypeptide=Lus10013842 locus=Lus10013842.g ID=Lus10013842.BGIv1.0 annot-version=v1.0 MGNTCRGSFKGKFYQGYSQPEDLSTTSRHNNPTSSHSDIHTDSINKENQHLPIVIIPKDITMRRTADNQAYYVLGHRPANIRDLYNLGRKLGQGQFGTTY LCTDISTGIEYACKSISKRKLISREDVDDVRREIQIMHHLAGHNNIVTIKGAYEDSLYVHIVMELCSGGELFDRIIQRGHYSERKAAELTKIIAGVVEAC HSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQIFSDVVGSPYYVAPEVLLKLYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKG HIDFDSDPWPLISESAKDLIRRMLCSSPKERLTAHEVLCHPWICENGVAPDRALDTAVLTRLKQFSAMNKLKKMALRVIAESLSEEEIAGLKEMFKSMDT DSSGAITFDELKAGLRRYGSTMKDTEIRDLMDAADVDNSGTIDYGEFIAATIHLNKLEREEHLVAAFRYFDKDGSGYITVDELQQACAEHNMTDVYIEDI ISEVDQDNDGRIDYAEFVAMMQKGNAGIGRRTMRNSLNLSMRDAPGAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17290		ATCPK6, ATCDPK3...	calcium dependent protein kina...		Lus10013842 [exp]	0	1
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Lus10034618 [exp]	6.2	0.8725
AT2G39650			Protein of unknown function (D...		Lus10002695 [exp]	7.0	0.8830
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10004382 [exp]	7.6	0.9009
AT1G03610			Protein of unknown function (D...		Lus10039803 [exp]	8.8	0.8422
AT5G45280			Pectinacetylesterase family pr...		Lus10033301 [exp]	9.4	0.8405
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012632 [exp]	14.0	0.8931
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042316 [exp]	14.1	0.8946
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Lus10008540 [exp]	14.8	0.8879
AT4G11950			Protein of unknown function (D...		Lus10006713 [exp]	15.1	0.8137
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Lus10011084 [exp]	15.6	0.8815

Compare expression of checked genes

Lus10013842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.