Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38225 303 / 3e-100 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026560 [exp] 158 / 2e-47 AT4G38225 59 / 6e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G207400 [exp] 327 / 8e-109 AT4G38225 397 / 8e-138 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013843 pacid=23159490 polypeptide=Lus10013843 locus=Lus10013843.g ID=Lus10013843.BGIv1.0 annot-version=v1.0 ATGATAAAAGAAGGGTATAGTAGAGAAATTTGCTTTGACGATGTACGTAAATCAGATTGTCAGTTAGTTGACGATAACGAGAAAGGAATATACCTCTCTA GAACTTCTCTTTCTCATTGTGTGGCCGCAACTGCTTTATTTTCTCCTCCCTCATCTCCCGCCACCGTTACCGGAGAACATAACCGGAAGAAAATGATGGC CTTGGCTTCTTCTCCATCCCTTCCATATACAGCTGCTGCTGCAGGAGCTCACGGCGGCAACTCCACCACCATCTACTCAGCCGCCGCTCCTCCTCTTTCA CCTCGTACTTCTCTCACGCTAAACCTCCCTCCTGCAGCTCACCCCTTCTTCCTTCCATCTCCACTTCACTATTCCAATCCCTTCATCCCCAAGGCGACCC CAATTCAGAATCCCGCCGCTGATCTGTTACTCCCTCAAATCCCTAGCCTAGGAGTACCCGACAACTGGACCGAATTCGCCGACCGGGTATCCGGCGAGTG GGACGGCTTCGGAGCAGACTTCACCCCTCAAGGATCCCCGATCGAGCTCCCTGAATCCGTCGTCCCCGAGGCCTATCGAGACTGGGAGGTTCTAGTCCAC GACTGGCAGACCCAGTGCCCCACCCTCGCCCGACCCGACTCGACCTCCCTCCTCTCCTACACTACCGTCAAGCTCCTCCCCACCGTCGGCTGCGAAGCCG ACGCCGCCACCCGACACACTTCCGAACAAAGGCTCGTCTCTTCCGCCTCTGCCTTCGCTTACCACTCTAGCGGCTCGTACGTGGCAGTCTGGCCGGCCGC CGCCGCCGCTGAGCTGGAATTAGAACATTGCTTGGTGAATCCGCTGGATCGGGAATCTCGTGTCAGGATCCTCCTCGCTCTCAGAATTAACAACGACGCG GCGACGATCTCGGTGGTTGGAATTAGGGCTTTCAGGGAACAGTGGTACGGACCGTTTAGAAATGGTGACCAATTAGGCGGATGTGCAATCAGGGATAGTG CCTTCGCCGCCACCCCTCCCCTCCATCCTTCCAAGCTGCTCGGCGTTTCCTGGGGCCGGGGATCCATTGCTGCTGCTGCTTTCCATCATCCAACTGGATC TATCCAGCAGCTTAATGATGGCGGCAGCAGCTTGGAGAGTGAATGTTTAGTTAGAGATGAGATCGGGCTGGTGCTGCTGCCAAAAGAAATGTGGTGTTCA GTGAAAGATAGTTTGTGCGAGGTTGGGTGGATGTTTGATGCTGGAAAAGCTGTTACTTTCACTTCCATCTTTGCTCCTGACGCCAAGCTTCAGGAAGTAC GGATAGCACAGGAAACTGCAGATCTGAAGGGGTGA
AA sequence Show only first row Show all	>Lus10013843 pacid=23159490 polypeptide=Lus10013843 locus=Lus10013843.g ID=Lus10013843.BGIv1.0 annot-version=v1.0 MIKEGYSREICFDDVRKSDCQLVDDNEKGIYLSRTSLSHCVAATALFSPPSSPATVTGEHNRKKMMALASSPSLPYTAAAAGAHGGNSTTIYSAAAPPLS PRTSLTLNLPPAAHPFFLPSPLHYSNPFIPKATPIQNPAADLLLPQIPSLGVPDNWTEFADRVSGEWDGFGADFTPQGSPIELPESVVPEAYRDWEVLVH DWQTQCPTLARPDSTSLLSYTTVKLLPTVGCEADAATRHTSEQRLVSSASAFAYHSSGSYVAVWPAAAAAELELEHCLVNPLDRESRVRILLALRINNDA ATISVVGIRAFREQWYGPFRNGDQLGGCAIRDSAFAATPPLHPSKLLGVSWGRGSIAAAAFHHPTGSIQQLNDGGSSLESECLVRDEIGLVLLPKEMWCS VKDSLCEVGWMFDAGKAVTFTSIFAPDAKLQEVRIAQETADLKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38225			unknown protein		Lus10013843 [exp]	0	1
AT1G61930			Protein of unknown function, D...		Lus10020047 [exp]	1.4	0.9517
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10006188 [exp]	2.6	0.9609
AT3G60690			SAUR-like auxin-responsive pro...		Lus10009286 [exp]	4.6	0.9282
AT4G14450		ATBET12	unknown protein		Lus10021878 [exp]	5.5	0.9309
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10040981 [exp]	5.9	0.9337
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10009352 [exp]	6.5	0.9347
AT4G26860			Predicted pyridoxal phosphate-...		Lus10032558 [exp]	7.1	0.9107
AT4G14615			unknown protein		Lus10006639 [exp]	8.0	0.9345
AT1G21065			unknown protein		Lus10016049 [exp]	8.5	0.9100
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10007954 [exp]	8.8	0.9002

Compare expression of checked genes

Lus10013843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.