Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35335 511 / 0 Nucleotide-sugar transporter family protein (.1) AT5G41760 173 / 2e-50 Nucleotide-sugar transporter family protein (.1.2) AT2G43240 119 / 1e-29 Nucleotide-sugar transporter family protein (.1.2) AT3G59360 117 / 6e-29 UTR6, ATUTR6 UDP-galactose transporter 6 (.1.2) AT5G65000 58 / 5e-09 Nucleotide-sugar transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026562 [exp] 637 / 0 AT4G35335 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10037204 [exp] 201 / 5e-61 AT5G41760 542 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10036726 [exp] 189 / 7e-56 AT5G41760 516 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10027009 [exp] 116 / 1e-27 AT2G43240 657 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10025486 [exp] 113 / 1e-27 AT2G43240 678 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Lus10026182 [exp] 58 / 4e-09 AT5G65000 446 / 1e-158 Nucleotide-sugar transporter family protein (.1.2) Lus10042484 [exp] 55 / 4e-08 AT5G65000 341 / 1e-116 Nucleotide-sugar transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G113200 [exp] 514 / 0 AT4G35335 581 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G094600 [exp] 176 / 2e-51 AT5G41760 525 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Potri.003G136800 [exp] 167 / 2e-48 AT5G41760 526 / 0.0 Nucleotide-sugar transporter family protein (.1.2) Potri.008G077300 [exp] 131 / 4e-34 AT3G59360 617 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.010G180500 [exp] 124 / 2e-31 AT3G59360 590 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.017G035800 [exp] 119 / 1e-29 AT3G59360 648 / 0.0 UDP-galactose transporter 6 (.1.2) Potri.007G092800 [exp] 57 / 1e-08 AT5G65000 429 / 6e-152 Nucleotide-sugar transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF04142 [flax] [poplar] Nuc_sug_transp Nucleotide-sugar transporter
Representative CDS sequence Show only first row Show all	>Lus10013845 pacid=23159433 polypeptide=Lus10013845 locus=Lus10013845.g ID=Lus10013845.BGIv1.0 annot-version=v1.0 ATGGAGTACCGCAAAATCAAAGACGAGGATCAATCTGATTCCGGGACTGCTGATGATGACATTGAGAACCTGAGAGGCAAATCGATTTCAGCTGTTTCAC TTAGTGGTATTGCTGCACTTGGAACTGGCCCGAACGACCGTTCCAAATGGAAGCGCAAGTCGATCGTCACTCTCGCATTAACTGTTCTTACAAGTTCACA AGCCATCCTGATCGTTTGGTCTAAAAGAGCTGGCAAGTATGAGTATAGTGTCACTACTGCCAATTTCCTGGTGGAAACTCTGAAATGCATGCTCTCGCTT GCTGCCTTGGCAAGAATATGGAAAAATGAGGGGGTTACAGAAGATAACAGGTTGAGTACAACATTCAATGAAGTGAGCGTCTATCCTGTTCCTGCTGCAC TCTACCTCGTCAAAAATCTGCTACAGTATTACATCTTTGCCTATGTGGATGCTCCAGGTTATCAGATTCTGAAGAACTTTAACATCATCAGCACTGGTAT TTTGTATCGAATGATACTTAAAAGAAAGTTGAGTGAGATCCAGTGGTCAGCTTTCATTCTTTTGTGTGCTGGGTGCACCACCGCCCAATTAAATCCTTCG TCTGATCATGTTCTTCAAACCCCTTTTCAAGGTTGGATGATGGCCATTGTAATGGCTCTTTTGAGTGGTTTCGCTGGAGTATACACCGAGGCCATAATGA AGAAGCGGCCTTCCAGGAACATAAATGTGCAGAATTTCTGGTTATACGTGTTTGGGATGGCTTTCAATGCCGTTGCAATAGTGATCCAAGATTTTGATGC AGTCATCAACAAAGGATTCTTCCATGGATACTCATTTGTTACAGTTCTCATGATTCTCAACCATGCCTTAAGTGGGATAGCGGTGTCCATGGTAATGAAA TATGCAGACAACATTGTAAAGGAGAACAATTGGTTTGCCATGTTAAATTTTGGAACTTTCGGTTACTTGATTAGGAGAATCTTTCAGCATTCTAGTAGAG TAGGTCCAAGAGTTCACGACCTCAGTGTATTCAACTTCTGTGGCAATGCTTCTCACAGCAGTTGTGTCGGTGTTCCTATTTGGCTTTCACCTGTCTCTGG CCTTCTTCCTTGGCTCCACAGTCGTCTCGGTGTCTGTGTATTTGCACTCCGTGGGAAAGCCGCCAAGATAGCGAGTGATTCACTTCGAGCCAGCAGCTGG ACTTGGCGTGTGCAAAGATGCGATGCTGTCACTTTTCAATCACACCGTTGA
AA sequence Show only first row Show all	>Lus10013845 pacid=23159433 polypeptide=Lus10013845 locus=Lus10013845.g ID=Lus10013845.BGIv1.0 annot-version=v1.0 MEYRKIKDEDQSDSGTADDDIENLRGKSISAVSLSGIAALGTGPNDRSKWKRKSIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCMLSL AALARIWKNEGVTEDNRLSTTFNEVSVYPVPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGILYRMILKRKLSEIQWSAFILLCAGCTTAQLNPS SDHVLQTPFQGWMMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVINKGFFHGYSFVTVLMILNHALSGIAVSMVMK YADNIVKENNWFAMLNFGTFGYLIRRIFQHSSRVGPRVHDLSVFNFCGNASHSSCVGVPIWLSPVSGLLPWLHSRLGVCVFALRGKAAKIASDSLRASSW TWRVQRCDAVTFQSHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35335			Nucleotide-sugar transporter f...		Lus10013845 [exp]	0	1
AT4G35335			Nucleotide-sugar transporter f...		Lus10026562 [exp]	1.4	0.9026
AT3G01810			unknown protein		Lus10041590 [exp]	1.4	0.8828
AT4G11450			Protein of unknown function (D...		Lus10002006 [exp]	5.3	0.8675
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	5.7	0.8720
AT4G30020			PA-domain containing subtilase...		Lus10001310 [exp]	6.7	0.8605
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	8.5	0.8549
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10012264 [exp]	8.8	0.8223
AT3G16060			ATP binding microtubule motor ...		Lus10037546 [exp]	10.1	0.8683
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10026923 [exp]	10.2	0.8708
AT5G23130			Peptidoglycan-binding LysM dom...		Lus10013432 [exp]	10.4	0.8156

Compare expression of checked genes

Lus10013845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.