Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35360 619 / 0 Uncharacterised conserved protein (UCP030210) (.1) AT2G17340 608 / 0 Uncharacterised conserved protein (UCP030210) (.1) AT2G17320 575 / 0 Uncharacterised conserved protein (UCP030210) (.1) AT4G32180 194 / 6e-55 ATPANK2 pantothenate kinase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026563 [exp] 704 / 0 AT4G35360 555 / 0.0 Uncharacterised conserved protein (UCP030210) (.1) Lus10009520 [exp] 203 / 8e-58 AT4G32180 1510 / 0.0 pantothenate kinase 2 (.1.2.3) Lus10020341 [exp] 128 / 6e-32 AT4G32180 1348 / 0.0 pantothenate kinase 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G207700 [exp] 630 / 0 AT4G35360 580 / 0.0 Uncharacterised conserved protein (UCP030210) (.1) Potri.009G169000 [exp] 618 / 0 AT4G35360 595 / 0.0 Uncharacterised conserved protein (UCP030210) (.1) Potri.012G081600 [exp] 196 / 2e-55 AT4G32180 1486 / 0.0 pantothenate kinase 2 (.1.2.3) Potri.015G077300 [exp] 192 / 4e-54 AT4G32180 1469 / 0.0 pantothenate kinase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01937 [flax] [poplar] DUF89 Protein of unknown function DUF89
Representative CDS sequence Show only first row Show all	>Lus10013846 pacid=23159434 polypeptide=Lus10013846 locus=Lus10013846.g ID=Lus10013846.BGIv1.0 annot-version=v1.0 ATGGAGAGAGATTCTGAGATGGTTCCATTCCCGCTGCTGTTGACGCCGATCGAGACCAACTACAGGGCATGTACAATTCCCTACAGATTCCCTTCCGATA ATCCTAGAAGAGCTACCCCTACTGAGCTCCAGTGGATCAACCTCTTCCTCAATTCCATTCCCTCTTTCAAGAAACGGGCTGAAGCAGATGATTCAGTTTC TGATGCTCCAGTCAGAGCTGAGAAATTCGCTCAAAGGTACTCTGAGATACTTGAGGACTTCAAGAAAGATCCAGAAAGCCATGCTGGACCACCTGATTGC ATTCTACTCTGTAGATTGAGGGAGCAAATCCTTCGAGAATTGGGATTCCGAGACATATTCAAGAAGGTCAAGGATGAAGAGAATATGAAGGCTATATCAC TGTTCAAAGAGGTAACTCGTCTTAATGATTCAATTGAAGAAGGGCCAAAGCGAGTAGAGAATCTGGCTCGGGGAATATTTGCAGGAAACATATTTGACCT CGGTTCTGCCCAGCTTGCTGAGGTGTTCTCAAGGGATGGAATATCCTTCTTGGCTAGTTGTCAAAATATTCTCCCTCGGCCATGGGTTATTGATGACCTG GAGGCTTTTAAAGTTAGATGGAGCAAGAAATCCTGGAAGAAGGCAAGTTTCAGATCTTTCTTTCTTCAAGCTCCTTATTCTGTGCTGCTGTTCACATTCC ACCACAATATCTGTTTCACCTCCTTCAAAGCTGTCATCTTCGTCGATAATTCAGGTGCAGATATCATCCTGGGTATTTTACCTTTTGCAAGAGAACTACT TCGACGTGGAACTCAGGTCGTATTGGCTGCCAATGACTTGCCTTCTATAAATGACATCACGTACCATGAGCTTATTGAGATTATATCAAAGTTGAAAGAT GAGAACGGGAAGCTCGAGGGTGTTGATGCCTCAAACCTTCTAGTTGCCAATTCTGGGAATGATCTACCAGTTATCGATTTAGCAAGTGTATCTCAAGAGC TAGCCTATTTAGCCAGTGATGCAGACCTAGTAGTCTTGGAAGGGATGGGTCGTGGGATAGAGACCAATCTTTATGCTCAGTTCAAGTGTGATTCACTCAA GGTTGGGATGGTGAAGCACCCAGAAGTTGCCCAGTTTCTTGGAGGAAGACTCTATGATTGTGTTTTCAAGTACAACGAGGTCTCAACTTAG
AA sequence Show only first row Show all	>Lus10013846 pacid=23159434 polypeptide=Lus10013846 locus=Lus10013846.g ID=Lus10013846.BGIv1.0 annot-version=v1.0 MERDSEMVPFPLLLTPIETNYRACTIPYRFPSDNPRRATPTELQWINLFLNSIPSFKKRAEADDSVSDAPVRAEKFAQRYSEILEDFKKDPESHAGPPDC ILLCRLREQILRELGFRDIFKKVKDEENMKAISLFKEVTRLNDSIEEGPKRVENLARGIFAGNIFDLGSAQLAEVFSRDGISFLASCQNILPRPWVIDDL EAFKVRWSKKSWKKASFRSFFLQAPYSVLLFTFHHNICFTSFKAVIFVDNSGADIILGILPFARELLRRGTQVVLAANDLPSINDITYHELIEIISKLKD ENGKLEGVDASNLLVANSGNDLPVIDLASVSQELAYLASDADLVVLEGMGRGIETNLYAQFKCDSLKVGMVKHPEVAQFLGGRLYDCVFKYNEVST

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35360			Uncharacterised conserved prot...		Lus10013846 [exp]	0	1
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	3.3	0.8517
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004745 [exp]	5.7	0.8085
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002300 [exp]	8.8	0.8080
AT4G35360			Uncharacterised conserved prot...		Lus10026563 [exp]	9.9	0.7798
AT5G40440		ATMKK3	mitogen-activated protein kina...		Lus10001137 [exp]	12.2	0.8068
AT1G64850			Calcium-binding EF hand family...		Lus10010653 [exp]	13.3	0.7972
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10031560 [exp]	13.7	0.7962
AT4G03030			Galactose oxidase/kelch repeat...		Lus10024874 [exp]	14.7	0.8048
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10014176 [exp]	15.6	0.7909
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	18.8	0.8032

Compare expression of checked genes

Lus10013846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.