Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17350 164 / 8e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026564 [exp] 175 / 4e-58 AT2G17350 189 / 9e-64 unknown protein Lus10022984 [exp] 151 / 1e-48 AT2G17350 177 / 6e-59 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G169200 [exp] 167 / 4e-55 AT2G17350 144 / 8e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013847 pacid=23159418 polypeptide=Lus10013847 locus=Lus10013847.g ID=Lus10013847.BGIv1.0 annot-version=v1.0 ATGTCACTGAGGATAAAGGCGGTGGTGGACAAATTCGTGGAGGAGCTGAAAGAAGCACTGGATGCCGACATCCAAGACCGTCTTATGAAGGAAAGGGAGA TGCAGAGTTACATCGAAGAGCGCGAACGCGAGGTCGCCGAGCGTGAAGCTGCTTGGAAGGCCGAGCTTTCTCGCCGCGTGGCCGAAATCGCGCGACAAGA AGCAAGGCTGAAGATGGAGAAAGAAAATCTGGAGAAAGAGAAGAGCGTGCTGATGGGGACAGCATCGGGCCAAGATAACCAAGACGGAGCTCTCGAAATA ACCGTGAGCGGGGAGAAGTACCGATGCTTGAGATTCTCCAAGGCTAAGAAATGA
AA sequence Show only first row Show all	>Lus10013847 pacid=23159418 polypeptide=Lus10013847 locus=Lus10013847.g ID=Lus10013847.BGIv1.0 annot-version=v1.0 MSLRIKAVVDKFVEELKEALDADIQDRLMKEREMQSYIEEREREVAEREAAWKAELSRRVAEIARQEARLKMEKENLEKEKSVLMGTASGQDNQDGALEI TVSGEKYRCLRFSKAKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17350			unknown protein		Lus10013847 [exp]	0	1
AT1G71950			Proteinase inhibitor, propepti...		Lus10038252 [exp]	1.7	0.8873
AT4G16530			Family of unknown function (DU...		Lus10000730 [exp]	2.4	0.8644
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10019084 [exp]	2.8	0.8662
AT5G19430			RING/U-box superfamily protein...		Lus10009695 [exp]	6.5	0.8254
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10017725 [exp]	8.7	0.8460
AT1G56423			unknown protein		Lus10029844 [exp]	9.4	0.8522
AT5G50720		ATHVA22E	ARABIDOPSIS THALIANA HVA22 HOM...		Lus10032557 [exp]	9.9	0.8414
AT4G38090			Ribosomal protein S5 domain 2-...		Lus10035937 [exp]	12.4	0.8351
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10025639 [exp]	13.4	0.8415
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	13.5	0.8271

Compare expression of checked genes

Lus10013847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.