Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38220 575 / 0 AQI aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) AT1G44180 489 / 9e-171 Peptidase M20/M25/M40 family protein (.1) AT1G44820 489 / 1e-170 Peptidase M20/M25/M40 family protein (.1) AT4G17830 44 / 0.0003 Peptidase M20/M25/M40 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026565 [exp] 769 / 0 AT4G38220 616 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Lus10042502 [exp] 486 / 1e-169 AT1G44820 635 / 0.0 Peptidase M20/M25/M40 family protein (.1) Lus10038151 [exp] 483 / 1e-167 AT1G44820 622 / 0.0 Peptidase M20/M25/M40 family protein (.1) Lus10040090 [exp] 47 / 3e-05 AT4G17830 740 / 0.0 Peptidase M20/M25/M40 family protein (.1.2) Lus10030957 [exp] 47 / 3e-05 AT4G17830 734 / 0.0 Peptidase M20/M25/M40 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G169300 [exp] 626 / 0 AT4G38220 646 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Potri.004G208100 [exp] 609 / 0 AT4G38220 635 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Potri.002G085500 [exp] 499 / 1e-174 AT1G44820 636 / 0.0 Peptidase M20/M25/M40 family protein (.1) Potri.002G085400 [exp] 498 / 5e-174 AT1G44820 660 / 0.0 Peptidase M20/M25/M40 family protein (.1) Potri.003G091100 [exp] 46 / 4e-05 AT4G17830 734 / 0.0 Peptidase M20/M25/M40 family protein (.1.2) Potri.001G143200 [exp] 42 / 0.0007 AT4G17830 744 / 0.0 Peptidase M20/M25/M40 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07687 [flax] [poplar] M20_dimer Peptidase dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF01546 [flax] [poplar] Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence Show only first row Show all	>Lus10013848 pacid=23159426 polypeptide=Lus10013848 locus=Lus10013848.g ID=Lus10013848.BGIv1.0 annot-version=v1.0 ATGGAGCCAATCAAGCTCACTCCCACTCTTCTCCCCCTCCTCCTCTCCCTCCTCCTCTTCCCATCTCCACCGTTCTCATCCGCCGCCGATTCCTCCTCCG CCGCCGCCCAAACAATCTCCCGCTTCCAGCAATACCTCCAGATCAACACCGCACAGCCAACCCCAAACTACTACCAAGCCGCTGAATTCCTCACTTCTCA AGCCGATTCCCTCTCCCTCCACACCCGTTCCTTCGAATTCGTCCCCGGCAAACCATTACTTCTCATCCACTGGCCCGGCTCCGACCCCTCCCTCCCTTCC ATCCTCCTCTACTCCCACACCGACGTCGTCCCCTCCGAACCAGACAAGTGGGACCATCCTCCTTTCTCCGCCCACCTCGATTCCCACGGCCGCATCTTCG CCAGAGGCTCCCAGGACATGAAGTGCGTCGGTATGCAGTACCTCGAGGCCGTTCGCCACCTCAAGGATTCCGGTTACCAGCCCCTCCGCTCCGTCTACCT CGCTTTCGCCCCCGATGAGGAGATCGGCGGCCACGATGGTGCCGAGTTGTTCGCTCAGTCTGAAGCCTTCAGCAGCTTGAACATTGGCGTTGTCCTGGAT GAAGGGCTGGCGTCGCCGGCTGATAATTACAGAGTGTTCTATGCTGAAAGGAGCCCATGGTGGTTGGTGATTAAGGCCAGTGGAGCTCCTGGACATGGGG CAAAGCTCTATGACAATAGTGCCGTGGAGAATCTGTTCAAGAGCATTGAAGCAGTTAGAAGGTTTAGGGCATCTCAGTTTGACTTGGTGAAAGCTGGCTT GAAGGGTGAAGGAGAGGTCATTTCTGTTAACATGGCTTTCCTCAAGGCTGGCACTCCTTCTCCCACTGGATTTGTCATGAATCTGCAGCCATCTGAAGCG GAAGCCGGGTTCGATATTCGCATCCCACCAACCGCTGATCCTGAATCATTGGAAAGACGGATCGCTGAAGAGTGGGCACCTGCTTCATGGAACATGACAT TCCAGCTTGGACAGTTCAAACAAAAGACTCCCTTGTGTGACAATGCTGGGAAGCCAAAGCTGACAAAGACGGGGAGTTCTAACCCATGGTGGATCCTATT TGAGGAAGCTGTAGGAAAAGCTAATGGAAACCTTGCTAAGCCAGAAATATTTCCTGCTGCAACAGACTCTCGATACTTCCGGGAACGAGGTCTTCCCGCA ATTGGCTTCTCTCCCATGTCCAACACACCCATTCTTTTGCATGATCACAATGAGGCTTATAGGCAATCTGTCTCAAACATAACTTTGGAGATGCCAAGAC CCGAAACCCACTGCATGCCCGAGGCAAGGTTGAGGGGCTCACCTTCGCAAGGCGGAAACAAGCAGGTGGCGAGCTGCATGGAGAAACCCAGGGTTCGGCC AGTTGCATCAAGCAAAATCATACCCAATCCACCACGTGGTGATGGTACAAAGCACGCAAAGTTTGAGTCACGGTCCGGAGTGCTAGCCGGAGAAGTAACT TGCAAGTGCGGTGGGACTGCGATGAACACTTTTTCGGGCTTGATCCCAAACTCACTTTGA
AA sequence Show only first row Show all	>Lus10013848 pacid=23159426 polypeptide=Lus10013848 locus=Lus10013848.g ID=Lus10013848.BGIv1.0 annot-version=v1.0 MEPIKLTPTLLPLLLSLLLFPSPPFSSAADSSSAAAQTISRFQQYLQINTAQPTPNYYQAAEFLTSQADSLSLHTRSFEFVPGKPLLLIHWPGSDPSLPS ILLYSHTDVVPSEPDKWDHPPFSAHLDSHGRIFARGSQDMKCVGMQYLEAVRHLKDSGYQPLRSVYLAFAPDEEIGGHDGAELFAQSEAFSSLNIGVVLD EGLASPADNYRVFYAERSPWWLVIKASGAPGHGAKLYDNSAVENLFKSIEAVRRFRASQFDLVKAGLKGEGEVISVNMAFLKAGTPSPTGFVMNLQPSEA EAGFDIRIPPTADPESLERRIAEEWAPASWNMTFQLGQFKQKTPLCDNAGKPKLTKTGSSNPWWILFEEAVGKANGNLAKPEIFPAATDSRYFRERGLPA IGFSPMSNTPILLHDHNEAYRQSVSNITLEMPRPETHCMPEARLRGSPSQGGNKQVASCMEKPRVRPVASSKIIPNPPRGDGTKHAKFESRSGVLAGEVT CKCGGTAMNTFSGLIPNSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38220		AQI	aquaporin interactor, Peptidas...		Lus10013848 [exp]	0	1
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Lus10023973 [exp]	1.0	0.9156
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10007347 [exp]	1.7	0.8977
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Lus10042565 [exp]	2.0	0.9028
AT5G60800			Heavy metal transport/detoxifi...		Lus10021432 [exp]	3.5	0.8867
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10022023 [exp]	5.3	0.8618
AT3G52155			Phosphoglycerate mutase family...		Lus10040405 [exp]	7.4	0.8170
					Lus10015445 [exp]	7.7	0.8149
AT3G18490			Eukaryotic aspartyl protease f...		Lus10042978 [exp]	8.7	0.8726
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042679 [exp]	9.8	0.8582
AT1G51370			F-box/RNI-like/FBD-like domain...		Lus10027020 [exp]	12.6	0.8521

Compare expression of checked genes

Lus10013848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.