Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38210 249 / 3e-83 ATHEXPALPHA1.23, ATEXP20, ATEXPA20 EXPANSIN 20, expansin A20 (.1) AT3G55500 207 / 3e-66 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G39700 204 / 3e-65 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT3G03220 203 / 7e-65 ATHEXPALPHA1.22, ATEXP13, ATEXPA13 EXPANSIN 13, expansin A13 (.1) AT2G37640 200 / 8e-64 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT5G02260 200 / 1e-63 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT5G56320 199 / 1e-63 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT5G05290 196 / 3e-62 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G03090 193 / 4e-61 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT2G40610 192 / 1e-60 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026566 [exp] 410 / 2e-146 AT4G38210 288 / 1e-98 EXPANSIN 20, expansin A20 (.1) Lus10027304 [exp] 214 / 7e-69 AT3G03220 411 / 1e-146 EXPANSIN 13, expansin A13 (.1) Lus10039009 [exp] 212 / 3e-68 AT3G03220 412 / 7e-147 EXPANSIN 13, expansin A13 (.1) Lus10010454 [exp] 210 / 2e-67 AT3G03220 408 / 2e-145 EXPANSIN 13, expansin A13 (.1) Lus10024388 [exp] 207 / 3e-66 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10003822 [exp] 208 / 1e-64 AT3G03220 409 / 4e-143 EXPANSIN 13, expansin A13 (.1) Lus10016533 [exp] 203 / 1e-64 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10040801 [exp] 202 / 1e-64 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10036763 [exp] 201 / 6e-64 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208300 [exp] 301 / 3e-102 AT4G38210 357 / 2e-124 EXPANSIN 20, expansin A20 (.1) Potri.009G169500 [exp] 297 / 4e-102 AT4G38210 335 / 5e-117 EXPANSIN 20, expansin A20 (.1) Potri.008G057100 [exp] 209 / 3e-67 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.010G202500 [exp] 207 / 1e-66 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.016G135200 [exp] 204 / 2e-65 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.001G240900 [exp] 204 / 2e-65 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.001G001100 [exp] 203 / 4e-65 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.008G088300 [exp] 202 / 1e-64 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.006G108000 [exp] 202 / 1e-64 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.009G031800 [exp] 202 / 2e-64 AT2G39700 453 / 1e-163 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10013849 pacid=23159513 polypeptide=Lus10013849 locus=Lus10013849.g ID=Lus10013849.BGIv1.0 annot-version=v1.0 ATGGGGCACTCCTCTCTTCACCAAATCCTCCTCCTCTGCTTCATCTCACTCAGCATTACCACCACCGCCGCCGCCGCCTTTACCTACGACGACGGAAACC CCACTTCCGCCTCCCATGAAGGCGAAGGCGACGGTGAATGGAAGTCCGCCACCGCCACCTACACCAAACAACCCGACGGAGGCTCCATCTCTCTCGGCGG AGCGTGCGGCTACGGCGACGTATTCCACGCCTTGACATACGGAAGCTACAGCGCCGGATTAAGCGCGATGCTCTTCAACCGAGGCAGCACTTGCGGCGCG TGCTTCCAAATCAGCCCGTCCGTCACCCTCACCGCCACCGACTTCTGCGCTCCCAACTACGCCCTCTCAGCCGACTACGGCGGGTGGTGCAACTTTTCCA AGCGACACTTCGAGCTCTCCGAGTCGGCATTCGCCGAGATCGCGGACGTTAAGAAGGCGGACATCGTCCCCGTCCAGTACAGGAAGGTGAAGTGCAACAG AGAAGGCGGCGGGGTGAGGTTCACGGCGAGCGGGAGCAGGCTATTCTACCAGGTGCTGATTACCAACGTCGCAGGCGACGGCGAGGTGGTCGGAGTTAAG GTGAAAGGTCGGCGGACCGGGTGGATTCCGATGGCGAGGAATTGGGGGCAGAACTGGCAGTGTTTTGTAGACCTAATTGGGCAGCCGCTTTCGTTCGAGG TCACGACTAGCGATGGTAAAACTGTGACGTCTTACAATGTTGCTCCTTCTAACTGGATGTTTGGCCAGACGTTCCAAGGGAAACAATTCTCTGGTTAA
AA sequence Show only first row Show all	>Lus10013849 pacid=23159513 polypeptide=Lus10013849 locus=Lus10013849.g ID=Lus10013849.BGIv1.0 annot-version=v1.0 MGHSSLHQILLLCFISLSITTTAAAAFTYDDGNPTSASHEGEGDGEWKSATATYTKQPDGGSISLGGACGYGDVFHALTYGSYSAGLSAMLFNRGSTCGA CFQISPSVTLTATDFCAPNYALSADYGGWCNFSKRHFELSESAFAEIADVKKADIVPVQYRKVKCNREGGGVRFTASGSRLFYQVLITNVAGDGEVVGVK VKGRRTGWIPMARNWGQNWQCFVDLIGQPLSFEVTTSDGKTVTSYNVAPSNWMFGQTFQGKQFSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Lus10013849 [exp]	0	1
AT3G18800			unknown protein		Lus10020872 [exp]	3.5	0.9462
AT1G68400			leucine-rich repeat transmembr...		Lus10035138 [exp]	3.9	0.9478
AT1G15190			Fasciclin-like arabinogalactan...		Lus10023183 [exp]	4.2	0.9437
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10041347 [exp]	5.3	0.9488
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10036753 [exp]	7.5	0.9318
AT3G27360			Histone superfamily protein (....		Lus10013948 [exp]	10.7	0.9483
AT3G18800			unknown protein		Lus10033505 [exp]	11.0	0.9261
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005893 [exp]	12.1	0.9261
AT1G73620			Pathogenesis-related thaumatin...		Lus10009058 [exp]	13.0	0.9410
AT3G57830			Leucine-rich repeat protein ki...		Lus10021022 [exp]	14.4	0.9302

Compare expression of checked genes

Lus10013849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.