Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76490 741 / 0 HMGR1, HMG1, AtHMGR1 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) AT2G17370 701 / 0 HMGR2, HMG2 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 2, 3-hydroxy-3-methylglutaryl-CoA reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026567 [exp] 850 / 0 AT1G76490 737 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208500 [exp] 754 / 0 AT1G76490 808 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.001G457000 [exp] 747 / 0 AT1G76490 833 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.011G145000 [exp] 746 / 0 AT1G76490 845 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.009G169900 [exp] 746 / 0 AT1G76490 815 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.002G004000 [exp] 743 / 0 AT1G76490 908 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.005G257000 [exp] 722 / 0 AT1G76490 817 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00368 [flax] [poplar] HMG-CoA_red Hydroxymethylglutaryl-coenzyme A reductase
Representative CDS sequence Show only first row Show all	>Lus10013850 pacid=23159506 polypeptide=Lus10013850 locus=Lus10013850.g ID=Lus10013850.BGIv1.0 annot-version=v1.0 ATGGAAGATGAGGAGATCGTCAATTCCGTAATTTCCGGGTCGATCCCTTCCTACTCGCTCGAATCAAAATTAGGGGATTGCAAGCGCGCCGCCGGAGTCC GACGCGAGGCTCTACAGAGGATCACGGGACGATCTCTCGCCGGATTGCCCCTCGACGGATTCGATTACGATTCAATTTTAGGTCAGTGCTGCGAAATGCC CGTTGGATACATCCAGATCCCCGTGGGGATCGCGGGGCCTCTGCTGCTCGATGGGAGAGAATATTCCGTCCCCATGGCCACCACTGAAGGCTGTTTGGTC GCCAGCACGAATCGTGGATGCAAGGCGATTCACTTGTCCGGCGGAGCTAGCAGCGTATTGTTGAAAGATGGGATGACGAGAGCTCCCGTCGTCAGATTCG CAACCGCCAAAAGAGCAGCATATCTCAAGATGTACCTGGAGGATCCGCTCAATTTCGAATCGTTGTCGCTGGTTTTCAACAAATCCAGCAGATTCGCCAA GCTCCAGAGCGTGAAGTGCTCCATCGCTGGGAAGAATCTGTACCTTAGATTCTGCTGCAGCACAGGGGATGCCATGGGGATGAACATGGTATCTAAAGGT GTTCAGAACGTCTTGGATTTCCTCCAGAATGATTTCCCTGACATGGACGTCATCGGCATCTCCGGCAATTTTTGCTCGGACAAGAAGCCGGCAGCGGTGA ATTGGATAGAAGGGAGGGGGAAGTCAGTAGTATGCGAGGCAATAATCAAAGGGGAAGTGGTGAAGAAGGTGTTGAAGACGAGTGTTGAATCTTTAGTGGA GCTTAACATGCTGAAGAATTTAACAGGTTCAGCCATGGCAGGAGCTCTTGGTGGGTTCAATGCTCATGCTAGTAACATCGTATCCGCTGTCTACATAGCT ACAGGCCAAGATCCAGCTCAGAACATTGAGAGCTCCCACTGTATCACCATGATGGAAGCTGTGAATGATGGGCTGGATCTGCATGTATCAGTCACCATGC CTTCCATCGAGGTAGGAACAGTGGGAGGTGGGACGCAATTGGCATCACAAGCAGCGTGCTTGAACTTGCTAGGGGTGAAAGGAGCGAGCAAAGAGACACC TGGAGCAAACGCAAGGCTATTGGCGACCATAGTGGCGGGATCAGTTCTTGCCGGTGAGCTCTCGTTGATGTCGGCACTCGCAGCAGGACAGCTGGTGAAG AGCCACATGAAGTACAACCGTTCCAGCAAGGATGTCACCACCATGGCTGCTTCCTCCTAA
AA sequence Show only first row Show all	>Lus10013850 pacid=23159506 polypeptide=Lus10013850 locus=Lus10013850.g ID=Lus10013850.BGIv1.0 annot-version=v1.0 MEDEEIVNSVISGSIPSYSLESKLGDCKRAAGVRREALQRITGRSLAGLPLDGFDYDSILGQCCEMPVGYIQIPVGIAGPLLLDGREYSVPMATTEGCLV ASTNRGCKAIHLSGGASSVLLKDGMTRAPVVRFATAKRAAYLKMYLEDPLNFESLSLVFNKSSRFAKLQSVKCSIAGKNLYLRFCCSTGDAMGMNMVSKG VQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGEVVKKVLKTSVESLVELNMLKNLTGSAMAGALGGFNAHASNIVSAVYIA TGQDPAQNIESSHCITMMEAVNDGLDLHVSVTMPSIEVGTVGGGTQLASQAACLNLLGVKGASKETPGANARLLATIVAGSVLAGELSLMSALAAGQLVK SHMKYNRSSKDVTTMAASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Lus10013850 [exp]	0	1
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10031535 [exp]	3.9	0.8966
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013486 [exp]	6.6	0.8592
AT2G25430			epsin N-terminal homology (ENT...		Lus10001502 [exp]	12.0	0.8750
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Lus10008339 [exp]	13.0	0.8673
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	15.9	0.8900
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10001313 [exp]	20.0	0.8837
AT5G11280			unknown protein		Lus10002030 [exp]	24.1	0.8796
AT1G70770			Protein of unknown function DU...		Lus10001593 [exp]	24.2	0.8861
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10041464 [exp]	28.0	0.8768
AT2G45010			PLAC8 family protein (.1.2)		Lus10038926 [exp]	29.2	0.8516

Compare expression of checked genes

Lus10013850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.