Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76510 258 / 4e-81 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) AT2G17410 263 / 2e-79 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2) AT1G20910 239 / 4e-74 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022981 [exp] 493 / 1e-170 AT2G17410 395 / 1e-128 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10001618 [exp] 481 / 5e-166 AT2G17410 395 / 4e-129 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10026569 [exp] 333 / 5e-114 AT1G76510 164 / 1e-51 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10016045 [exp] 212 / 3e-63 AT1G76510 374 / 1e-126 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208900 [exp] 363 / 2e-120 AT2G17410 416 / 6e-137 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.002G003700 [exp] 251 / 2e-78 AT1G76510 451 / 5e-157 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.001G456500 [exp] 243 / 2e-74 AT2G17410 420 / 3e-139 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.011G145450 [exp] 237 / 6e-72 AT2G17410 423 / 3e-140 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.005G257300 [exp] 112 / 3e-27 AT1G76510 221 / 1e-68 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013852 pacid=23159491 polypeptide=Lus10013852 locus=Lus10013852.g ID=Lus10013852.BGIv1.0 annot-version=v1.0 ATGGTTGATCCGAAAGAAGCTCAAAGTGATGATGTCGTTGCTGCTAATACTACGGCCGCTGATGGAGAGCCCAACCTCAATTTAGCTCAGAATCATCAGC AGCCTCCCCAACTCCCGACTGAAACTAAAGTGGGAGAATCGTCTTCATTGGATGCTGCTACTACAGCGGATATCTCTCAGCCTTCCACTGGGATTGAACT TGCCTCGGATGATGTTGATCATCCCAACAATCCGGATTCCTTGCTTCCTGTTGATGATAAAGAGTCTCTTCAATCTTTCGCTTGTGAGAAACCTGTTGAT AATAATGGATGGTTAGACGAGGATGCCGGCCAATTTCAGGAGGAGGTAGCCAATGAAGATGCCAGTTTCAAATCTATGCCCTTTGATGACTGTGGGGAAG ATAATGTCACTGTTGGTCCAGATGATAAGCAACCTTCTACATCCAAATATGTGGAAGCCGAGAACAAAGATGAGCAACGCTGTGAGGAAGTATCTGCAAT GGCCAAGGGTGACCAGTCTCTGCACTCTGAAAATAATAAGGAACTGGCAATATCCAAGTTGGACGATGAACCTGAAGACCATCTTAGAACTCCTAGTAAA TCTTTCCTTTTGGAACCTTATTCAGATGAGGGATACGAGTCAGGAACAGAAGAAGAACAAGCAGAGTTTGTAAGGGGGGTTGAAGCATTTTATAAAGAAA ATTACTTGGAGTTCAAGGCCCCGAAGTTCTATAAAGAAGAACTAAACCTGCTGAAGACCTGCACAACTGTCTCATGGACATTCCGAAATTTTTATGAAAA GGCATTGCTTGAATATGAGAAGCATAAAATGCATAATGGGGAGCTACCTTTTTCTGATGGTTTATCGATGGATGCTACAAGATCTGAAAACCAGTCTGGT GGAAACCAAGCTCTTGCATCAGGTCGAGCACCAAGACGAGATGCTGCTGCTCGTGCAATGCAGGGTTGGCATTCTCAACGTCTTCTTGGTAATGGTGAGG TTTGCCAACCAATCATTAAGGATAAGACTCTGAGTTCTATTCCCAAGACTGACAAGCCATTGAAGGCAAATGGTGTACTTAAGCGCAAGAAGCAATCAAG TGCCGAGCGTGGTCTCCATGTTTCTCCCCTGAAAACAACGAGGACACAAGCTGATACAGTGATAACTGATGTCGGACCCCCTGCTGAATGGGTGAAGATC AATGTACAAAGAACTAATGATTGCTACGAGGTATATGCTCTAGTTCCAGGACTTCTGCGCGAGGAGGTGCATGTTCAGTCTGATCCAGCAGGGCGCTTAG TTATATCTGGTCAGCCAGAGCAACTTGAGAACCCATGGGGTGTTACCCCATTCAAAAAGTTTTCACTTGCAGGTGGTCAGCCTACCTTCCAGGATCGACC CGCACCAGACAACTGCTGTAGTGACCCTGCACGGCCAGTTATTTGTACGGGTACCCTTTGA
AA sequence Show only first row Show all	>Lus10013852 pacid=23159491 polypeptide=Lus10013852 locus=Lus10013852.g ID=Lus10013852.BGIv1.0 annot-version=v1.0 MVDPKEAQSDDVVAANTTAADGEPNLNLAQNHQQPPQLPTETKVGESSSLDAATTADISQPSTGIELASDDVDHPNNPDSLLPVDDKESLQSFACEKPVD NNGWLDEDAGQFQEEVANEDASFKSMPFDDCGEDNVTVGPDDKQPSTSKYVEAENKDEQRCEEVSAMAKGDQSLHSENNKELAISKLDDEPEDHLRTPSK SFLLEPYSDEGYESGTEEEQAEFVRGVEAFYKENYLEFKAPKFYKEELNLLKTCTTVSWTFRNFYEKALLEYEKHKMHNGELPFSDGLSMDATRSENQSG GNQALASGRAPRRDAAARAMQGWHSQRLLGNGEVCQPIIKDKTLSSIPKTDKPLKANGVLKRKKQSSAERGLHVSPLKTTRTQADTVITDVGPPAEWVKI NVQRTNDCYEVYALVPGLLREEVHVQSDPAGRLVISGQPEQLENPWGVTPFKKFSLAGGQPTFQDRPAPDNCCSDPARPVICTGTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10013852 [exp]	0	1
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10027738 [exp]	8.4	0.8841
AT1G06230		GTE4	global transcription factor gr...		Lus10033624 [exp]	8.5	0.8914
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	8.6	0.8927
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10023583 [exp]	9.9	0.8858
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10023288 [exp]	17.5	0.8835
AT5G58410			HEAT/U-box domain-containing p...		Lus10026420 [exp]	22.6	0.8784
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Lus10040555 [exp]	24.0	0.8742
AT2G47300			ribonuclease Ps (.2.3)		Lus10001156 [exp]	24.5	0.8498
AT1G02080			transcription regulators (.1.2...		Lus10028176 [exp]	24.5	0.8854
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10011692 [exp]	25.5	0.8773

Compare expression of checked genes

Lus10013852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.