Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38150 291 / 2e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT5G03560 137 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G61400 122 / 2e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 121 / 6e-30 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G63630 115 / 8e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G12775 119 / 2e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 117 / 6e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63230 112 / 3e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 114 / 7e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 112 / 4e-27 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026570 [exp] 593 / 0 AT4G38150 303 / 5e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10024962 [exp] 111 / 7e-27 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032789 [exp] 108 / 8e-27 AT1G09820 250 / 4e-78 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10040633 [exp] 110 / 2e-26 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032648 [exp] 105 / 2e-26 AT3G16890 225 / 1e-69 pentatricopeptide (PPR) domain protein 40 (.1) Lus10013283 [exp] 109 / 6e-26 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10015397 [exp] 107 / 1e-25 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022861 [exp] 107 / 2e-25 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027916 [exp] 107 / 2e-25 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209500 [exp] 320 / 2e-107 AT4G38150 314 / 4e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Potri.010G035700 [exp] 127 / 3e-32 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.005G050180 [exp] 123 / 6e-31 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 122 / 9e-31 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 122 / 2e-30 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 120 / 6e-30 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050240 [exp] 119 / 2e-29 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 117 / 8e-29 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 117 / 9e-29 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 115 / 3e-28 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013853 pacid=23159423 polypeptide=Lus10013853 locus=Lus10013853.g ID=Lus10013853.BGIv1.0 annot-version=v1.0 ATGGCGGCGTCATCGTCTCTGTTGAAGGTAAGAGCTTCAATCTCCAGCTCAATTTCTACGCTGTTATGCCGCTGCAGTTCTTCGGCGGCTGGGGAAACTG GTTTTACTAAACAAATCGAAAATGATGAAGCCAGCGGTCGTGATCTTCCTCCTCCTCCAAATCCTATACCTAATAGGCCTCTGAGGCGTGAGAGAACCTT TCAGTCTCGTTCCGTCGGCCCTCAACCGCCACCGCCGCCTTCACGCTTCCCTCAAAATCAGAATGTTCAGTTTCAGGCACAGAGCCGGACGAGGCCGATT AATCAGGAGGATAAAGTCTCCGACGATGCTTTCCTCGACAGATTCAAGCTCCGGCGTAAAAAGGTCGAGGCTGAGATCAAGGATCCCCGTATTACTACTC CTAACGTTTCCGCTGGCGAACCAGCTTCGCCGAAAGAAGGCGATGATGAACCTCATCGGAGCTCCAACAAATCCGATCACTCCCGCCTCCAAGCTCCCCC TCCAGACGCGGACGAGATATTCAAGAAGATGAAAGAGACCGGCCTGATCCCTAACGCCGTCGCCATGCTGGACGGGTTATGCAAGGACGGCCTGGTACAA GATGCGATGAAGCTCTTCGGTCAGATGAGGGAGAAAGGGACGATGCCGGAGGTTGTTATCTACACAGCGGTGGTGGACGGTTTCTGCAAGGCCCGAAAAC CCGACGACGCAAAGAGGATTTTCAGGAAAATGGTCAGCAATGGGATCAACCCTAACGCGTTCACCTACACGGTGTTGATACAAGGGCTTTACAAGAGTGG GAATTTAGACGACGCAGTTGATTTTGCCGGGGAAATGCTGGAGGCTGGGCATTCTCCCAATGTTGCCACCTTTGTAGGGTTGGTGGATGGGTTCTGTAAA GAGAAGGGAGTTGAGGAAGCTCAGAGCGTCATCAAGTCTTTGCGGCAGAAGGGTATGTTTCTGAATGATAAGGCTGTGAGGGAGTTTTTGGATAAGAATG CTCCGTTATCTTCGTCGCTTTGGGAAGCTATCTTTGGGAAGAAACCTACTCAGAAGCTCTTCTAA
AA sequence Show only first row Show all	>Lus10013853 pacid=23159423 polypeptide=Lus10013853 locus=Lus10013853.g ID=Lus10013853.BGIv1.0 annot-version=v1.0 MAASSSLLKVRASISSSISTLLCRCSSSAAGETGFTKQIENDEASGRDLPPPPNPIPNRPLRRERTFQSRSVGPQPPPPPSRFPQNQNVQFQAQSRTRPI NQEDKVSDDAFLDRFKLRRKKVEAEIKDPRITTPNVSAGEPASPKEGDDEPHRSSNKSDHSRLQAPPPDADEIFKKMKETGLIPNAVAMLDGLCKDGLVQ DAMKLFGQMREKGTMPEVVIYTAVVDGFCKARKPDDAKRIFRKMVSNGINPNAFTYTVLIQGLYKSGNLDDAVDFAGEMLEAGHSPNVATFVGLVDGFCK EKGVEEAQSVIKSLRQKGMFLNDKAVREFLDKNAPLSSSLWEAIFGKKPTQKLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38150			Pentatricopeptide repeat (PPR)...		Lus10013853 [exp]	0	1
AT2G16940			Splicing factor, CC1-like (.1....		Lus10025075 [exp]	6.0	0.6465
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10008437 [exp]	6.3	0.6932
AT5G05130			DNA/RNA helicase protein (.1)		Lus10039001 [exp]	7.8	0.7036
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10043008 [exp]	11.8	0.6673
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10002871 [exp]	14.7	0.6622
AT3G06240			F-box family protein (.1)		Lus10038603 [exp]	18.2	0.6623
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020315 [exp]	24.6	0.6700
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	26.2	0.6858
AT1G21320			nucleotide binding;nucleic aci...		Lus10018903 [exp]	28.3	0.6834
AT5G01160			RING/U-box superfamily protein...		Lus10017185 [exp]	29.4	0.6471

Compare expression of checked genes

Lus10013853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.