Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38160 446 / 3e-158 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT1G78930 131 / 4e-34 Mitochondrial transcription termination factor family protein (.1) AT2G21710 118 / 2e-29 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT2G44020 115 / 1e-28 Mitochondrial transcription termination factor family protein (.1) AT4G02990 112 / 1e-27 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT5G55580 107 / 1e-25 Mitochondrial transcription termination factor family protein (.1) AT3G18870 99 / 6e-24 Mitochondrial transcription termination factor family protein (.1) AT4G14605 98 / 1e-22 Mitochondrial transcription termination factor family protein (.1) AT5G54180 82 / 3e-17 PTAC15 plastid transcriptionally active 15 (.1) AT2G36000 78 / 3e-16 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026571 [exp] 397 / 6e-140 AT4G38160 252 / 4e-83 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Lus10035714 [exp] 136 / 6e-36 AT1G78930 582 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10014877 [exp] 128 / 4e-33 AT4G02990 665 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10035227 [exp] 125 / 6e-32 AT4G14605 518 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10032061 [exp] 123 / 2e-31 AT4G14605 521 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10003775 [exp] 122 / 6e-31 AT5G55580 546 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10022321 [exp] 119 / 5e-30 AT4G02990 540 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Lus10004614 [exp] 117 / 3e-29 AT2G44020 707 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10042322 [exp] 117 / 7e-29 AT2G21710 720 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209400 [exp] 526 / 0 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.009G170300 [exp] 518 / 0 AT4G38160 479 / 8e-170 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) Potri.007G001800 [exp] 137 / 5e-36 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.014G137400 [exp] 120 / 2e-30 AT4G02990 669 / 0.0 RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) Potri.009G116200 [exp] 119 / 1e-29 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.001G361800 [exp] 115 / 2e-28 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.013G116700 [exp] 114 / 4e-28 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.017G067600 [exp] 103 / 1e-24 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.004G150600 [exp] 98 / 2e-23 AT3G18870 311 / 1e-106 Mitochondrial transcription termination factor family protein (.1) Potri.016G072200 [exp] 83 / 9e-18 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10013854 pacid=23159448 polypeptide=Lus10013854 locus=Lus10013854.g ID=Lus10013854.BGIv1.0 annot-version=v1.0 ATGGCGTGTAATCAAAACCCTACCAGCGTGATGTGGTTCTTTCGGGACAGAGGCTTCGACGAGAAAAGCATCAACGACATGTTCACAAAGTGCAAGCGTC TTGAAGGTGCTCACAAGGATAGAGCATCTGAGAATTGGGATTTCTTGAAAAGCATTGGCATTCAAGAAAGGAAGCTCCCTTCCATAATCTCCAAGTGCCC CAAACTCCTAACCCTCGGCCTCCACGAGAGGCTCGTCCCTATGGTGGAGTGTCTCGCCACGCTCGGTACGAAACCACGCGAGGTTGCATCGACAATCACC AAGTTCCCTCACATACTCTCTCATAGCGTTCAAGAGAAGCTATGCCCTCTATTGGCATTCTTTCAAGCACTGGGGATTTCTGATAAACAAGTTGGGAAGC TGATAATGCTCAATCCTAGGCTGGTTAGCTACAGCATTGATACCAAGATGAAAGAGCTTGTTGACTTCCTTGTTGGTTTGGGGCTCACCAGAGATGGAAT GATCGGTAGAGTTCTTGTGAAGCACCCTTTCATATTGGGGTACAATATAGAGAAAAGGCTGCGGCCAACCTGCGAGTTCTTAAGATCGGTTGGCCTCTCA GCTTCTGATCTTCAGACTGTTGTTTTGAAGTTCCCTGATGTTGTGTGTAGAGATGTGGAGAAGACTTTGAAACCGAATTTTGCTTATCTGAGGGGATGTG GGTTTGGAGATGGACAGTTGGTTGCTTTGGTGACTGGTTACCCTCCCATTCTGATCAAGAGCATCCAGAATTCTTTAGAACCTAGGATGAAGTTCTTGGT TGATGTTATGGGGAGACAGCTTGATGAAGTTGTGGAGTACCCTAACTTCTTCCAGTGTGGGTTGAAGAAGACGCTGGAGTCGAGGCACAGATTTTTGAGG CAGAGGAATGTAGAATGTAGCTTGAGCGATATGTTGAGCTGTAATCATAAGAAGTTCTTCATGAAATATGGGTCCGGTTGA
AA sequence Show only first row Show all	>Lus10013854 pacid=23159448 polypeptide=Lus10013854 locus=Lus10013854.g ID=Lus10013854.BGIv1.0 annot-version=v1.0 MACNQNPTSVMWFFRDRGFDEKSINDMFTKCKRLEGAHKDRASENWDFLKSIGIQERKLPSIISKCPKLLTLGLHERLVPMVECLATLGTKPREVASTIT KFPHILSHSVQEKLCPLLAFFQALGISDKQVGKLIMLNPRLVSYSIDTKMKELVDFLVGLGLTRDGMIGRVLVKHPFILGYNIEKRLRPTCEFLRSVGLS ASDLQTVVLKFPDVVCRDVEKTLKPNFAYLRGCGFGDGQLVALVTGYPPILIKSIQNSLEPRMKFLVDVMGRQLDEVVEYPNFFQCGLKKTLESRHRFLR QRNVECSLSDMLSCNHKKFFMKYGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10013854 [exp]	0	1
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10037629 [exp]	2.0	0.9746
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10022041 [exp]	2.6	0.9679
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Lus10043055 [exp]	2.6	0.9753
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10038404 [exp]	6.3	0.9640
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	6.9	0.9704
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10041469 [exp]	6.9	0.9664
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10001861 [exp]	7.1	0.9692
AT5G54600			Translation protein SH3-like f...		Lus10005180 [exp]	7.7	0.9699
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	8.1	0.9683
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10026571 [exp]	9.2	0.9592

Compare expression of checked genes

Lus10013854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.