Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58140 368 / 5e-120 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 291 / 7e-88 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT2G02710 91 / 1e-19 PLPC, PLPB, PLPA, PLP PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) AT1G68050 78 / 4e-15 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT2G18915 71 / 8e-13 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2) AT5G57360 70 / 2e-12 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026572 [exp] 579 / 0 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001355 [exp] 459 / 5e-153 AT5G58140 1141 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001604 [exp] 405 / 5e-132 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10018122 [exp] 316 / 4e-98 AT3G45780 1191 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10036144 [exp] 308 / 4e-95 AT3G45780 1061 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10037216 [exp] 80 / 6e-16 AT2G02710 425 / 2e-148 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Lus10036711 [exp] 77 / 5e-15 AT2G02710 389 / 1e-133 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Lus10006959 [exp] 74 / 8e-14 AT5G57360 1024 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10030757 [exp] 74 / 2e-13 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209700 [exp] 430 / 1e-140 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G170640 [exp] 405 / 1e-133 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G342000 [exp] 290 / 1e-87 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.008G180700 [exp] 86 / 8e-18 AT2G02710 427 / 5e-149 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Potri.010G053500 [exp] 80 / 7e-16 AT2G02710 431 / 2e-150 PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3) Potri.010G105700 [exp] 79 / 3e-15 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.008G135200 [exp] 74 / 1e-13 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.018G090800 [exp] 73 / 2e-13 AT5G57360 1042 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.006G166300 [exp] 71 / 1e-12 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold
Representative CDS sequence Show only first row Show all	>Lus10013856 pacid=23159443 polypeptide=Lus10013856 locus=Lus10013856.g ID=Lus10013856.BGIv1.0 annot-version=v1.0 ATGACTGGTTACTCTACTAAGGAAGTCATCGGCCGGAACTGCCGGTTTCTGCAAGGTCCGGACACAGACGTGAAAGAAGTAGCGAAGATCAGAGAGGCGG TGAAGAGCGGGAAGAGCTTCAGTGGAAGGCTTCTCAACTACAAGAAAGATGGCACTCCTTTCTGGAATCTCCTCACTGTCACTCCTATCAAGGATGACCT CGGCAACACCATCAAATTCATCGGAATGCAGGTGGAGGTCAGCAAATACACCGAAGGTATTACTGACCAGGCCATGCGCCCCAATGGCTTACCAAAGTCA CTCATCCGTTACGATGCTCGACAGAAGGATAAGGCACTGGATTCCATCAATGAAGTTGTTCAAACAATCAAGCATCCGAAGTCTCATGTTCGGACAGCGA GCCATGACACTGCCGATGGTCTTGACTTTGTCCCGCCCAAATCCGCTGATCTTAGCTCCATGGTTACACCTGGTAGAGAAACTCCTCGCTCTGACGCTTC TCGCATTGGTAGTCCTCAGGGTTATGCTAAGAAACCCAGGAATTCTCTACGACTTTCCTTCATGGGCCGGCTTAGAGGTGATTCTACAAGTTCTTCGAAG AAGTACGAAGAACCACTTGAACCAGAGGATTTGATGACCAAGGATGTTAGTCGTACCGACAGTTGGGAACACGTTGAAAGAGACAGGGACATGCGTCAAG GATTTGATTTGGCAACTACGCTGGAGCGCATTGAGAAGAATTTTGTGATCACTGATCCTAGGATTCCAGATAACCCCATTATATTTGCTTCAGATAGCTT TCTTGAACTGACAGAGTACACACGCGAAGAAATCTTGGGAAGAAATTGTAGAATGCAGGTGGAGGTCAGCAAATACACCGAAGGTATTACTGACCAGGCC ATGCGCCCCAATGGCTTACCAAAGTCACTCATCCGTTACGATGCTCGACAGAAGGATAAGGCACTGGATTCCATCAATGAAGTTGTTCAAACAATCAAGC ATCCGAAGTCTCATGTTCGGACAGCGAGCCATGACACTGCCGATGGTCTTGACTTTGTCCTGCCCAAATCCGCTGATCTTAGCTCCATGGTTACACCTGG TAGAGAAACTCCTCGCTCTGACGCTTCTCGCATTGGTAGTCCTCAGGGTTATGCTAAGAAACCCAGGAATTCTCTACGACTTTCCTTCATGGGCCGGCTT AGAGGTGATTCTACAAGTTCTTCGAAGAAGTACGAAGAACCACCAAGTCTTGAACCAGAGGATTTGATGACCAAGGACGTTAGTCGTACCGACAGTTGGG AACACGTTGAAAGAGACAGGGACATGCGTCAAGGATTTGATTTGGCAACTACGCTGGAGCGCATTGAGAAGAATTTTGTGATCACTGATCCTAGGATTCC AGATAACCCCATTGTATGTCTGTTTACAGTTCATGATTCTTTTTTGACGTTGCACTTTGCATGTTTAGGTGTTCAGATAGATCAAGAAACCTTTATTCTT CCCAAGTGTCAAATTTTCTACTCTTCAAGAGTAGGGGTCAAACTGACCTTAAATGCTTTCGTATTGTGA
AA sequence Show only first row Show all	>Lus10013856 pacid=23159443 polypeptide=Lus10013856 locus=Lus10013856.g ID=Lus10013856.BGIv1.0 annot-version=v1.0 MTGYSTKEVIGRNCRFLQGPDTDVKEVAKIREAVKSGKSFSGRLLNYKKDGTPFWNLLTVTPIKDDLGNTIKFIGMQVEVSKYTEGITDQAMRPNGLPKS LIRYDARQKDKALDSINEVVQTIKHPKSHVRTASHDTADGLDFVPPKSADLSSMVTPGRETPRSDASRIGSPQGYAKKPRNSLRLSFMGRLRGDSTSSSK KYEEPLEPEDLMTKDVSRTDSWEHVERDRDMRQGFDLATTLERIEKNFVITDPRIPDNPIIFASDSFLELTEYTREEILGRNCRMQVEVSKYTEGITDQA MRPNGLPKSLIRYDARQKDKALDSINEVVQTIKHPKSHVRTASHDTADGLDFVLPKSADLSSMVTPGRETPRSDASRIGSPQGYAKKPRNSLRLSFMGRL RGDSTSSSKKYEEPPSLEPEDLMTKDVSRTDSWEHVERDRDMRQGFDLATTLERIEKNFVITDPRIPDNPIVCLFTVHDSFLTLHFACLGVQIDQETFIL PKCQIFYSSRVGVKLTLNAFVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10013856 [exp]	0	1
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10020304 [exp]	2.4	0.9149
AT1G49380			cytochrome c biogenesis protei...		Lus10040510 [exp]	2.8	0.9194
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10026321 [exp]	3.0	0.9202
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10018229 [exp]	7.7	0.8925
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10009973 [exp]	9.6	0.9135
AT5G08650			Small GTP-binding protein (.1)		Lus10025694 [exp]	9.8	0.9021
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	11.2	0.9134
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10008032 [exp]	12.0	0.8877
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10010515 [exp]	12.4	0.9088
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	14.5	0.9114

Compare expression of checked genes

Lus10013856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.