Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35440 296 / 6e-95 CLCE, ATCLC-E, CLC-E chloride channel E (.1.2) AT1G55620 120 / 1e-30 CLCF, ATCLC-F, CLC-F chloride channel F (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026573 [exp] 531 / 0 AT4G35440 455 / 4e-155 chloride channel E (.1.2) Lus10027138 [exp] 119 / 1e-29 AT1G55620 1050 / 0.0 chloride channel F (.1.2) Lus10032888 [exp] 117 / 2e-29 AT1G55620 1052 / 0.0 chloride channel F (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209900 [exp] 318 / 1e-103 AT4G35440 730 / 0.0 chloride channel E (.1.2) Potri.001G472700 [exp] 124 / 1e-31 AT1G55620 860 / 0.0 chloride channel F (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain PF00654 [flax] [poplar] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Lus10013857 pacid=23159472 polypeptide=Lus10013857 locus=Lus10013857.g ID=Lus10013857.BGIv1.0 annot-version=v1.0 ATGGCATATGGCAAACTGATTGCGCTTGCAGTTGCTCAGTCGCAGATAACAGAGCAATTTTCCATCTTGGAAGTTGCTTCACCACAAGCTTACGGCCTGG TTGGAATGGCTGCAACACTTGCAGGAGTGTGTCAAGTGCCTCTTACTGCAGTTCTGCTACTGTTTGAACTAACACATGACTATCGAATAGTCCTTCCACT ACTTGGAGCCGTAGGGTTATCCTCATGGGTCACCTCAGGACAAATGAGAAGAGATACTAAAGACATCAGAAAACAAGAGGAGCAACAAAATCCTACTCAA ACTCCGCAAAACTCAGCATCAACCACAAATGCAAGTCTCCCTGCCCGCAATGATAAGCAACTGAACACAAGTGATCTTTGCGAAATCGAAAGTTCTCTCT GCATGGATGATTCTGTTCCCGTGTATAGCAAACCAATTCTTGTATCTCAAGCCATGAGGACAAGATACGCAACCGTTACCATGAACACCTTGCTCAGTGA AGCAGTGAGGCTCATGCTTGAAGAGAAGCAGTCTTGCGCGTTAATTCTTGATCATGATGCTACTCTGATCGGTTTACTAACCCTCGAAGACATTGAGAAC TTCATCAAAACTGGGAAAGCAGAAAGCTGGAGATCACAGGACTTCTCTGTATCGGAGATATGCTCGTGGGGGGCCAAAGCCTGCCAGATACCCTGGACTG TAAAACCCAGTACGGACCTCCTTTCAGCGCAGCTTATTATGGATAGGCATAATCTGAATCAAGTACCAGTTCTATCAGAAGGTTTAACAGACAATGAATC AGGTAATTTAGTTGGGCTATTGGACAGAGAGTGCATATATATAACCCGCAGATTCTTCACTAATATTTGTAAATGA
AA sequence Show only first row Show all	>Lus10013857 pacid=23159472 polypeptide=Lus10013857 locus=Lus10013857.g ID=Lus10013857.BGIv1.0 annot-version=v1.0 MAYGKLIALAVAQSQITEQFSILEVASPQAYGLVGMAATLAGVCQVPLTAVLLLFELTHDYRIVLPLLGAVGLSSWVTSGQMRRDTKDIRKQEEQQNPTQ TPQNSASTTNASLPARNDKQLNTSDLCEIESSLCMDDSVPVYSKPILVSQAMRTRYATVTMNTLLSEAVRLMLEEKQSCALILDHDATLIGLLTLEDIEN FIKTGKAESWRSQDFSVSEICSWGAKACQIPWTVKPSTDLLSAQLIMDRHNLNQVPVLSEGLTDNESGNLVGLLDRECIYITRRFFTNICK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013857 [exp]	0	1
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10004466 [exp]	1.4	0.8754
AT3G24760			Galactose oxidase/kelch repeat...		Lus10025938 [exp]	3.5	0.8471
AT5G08400			Protein of unknown function (D...		Lus10009625 [exp]	3.5	0.8288
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10000791 [exp]	4.9	0.8521
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026573 [exp]	6.9	0.8440
					Lus10012564 [exp]	12.7	0.7994
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Lus10031030 [exp]	14.4	0.7577
AT4G14385			unknown protein		Lus10011821 [exp]	14.8	0.8250
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10033247 [exp]	15.0	0.7849
AT3G56010			unknown protein		Lus10040939 [exp]	17.0	0.8273

Compare expression of checked genes

Lus10013857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.