Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35440 170 / 4e-48 CLCE, ATCLC-E, CLC-E chloride channel E (.1.2) AT1G55620 121 / 5e-31 CLCF, ATCLC-F, CLC-F chloride channel F (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026574 [exp] 389 / 2e-137 AT4G35440 162 / 3e-45 chloride channel E (.1.2) Lus10032888 [exp] 115 / 8e-29 AT1G55620 1052 / 0.0 chloride channel F (.1.2) Lus10027138 [exp] 115 / 1e-28 AT1G55620 1050 / 0.0 chloride channel F (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209900 [exp] 181 / 3e-52 AT4G35440 730 / 0.0 chloride channel E (.1.2) Potri.001G472700 [exp] 108 / 2e-26 AT1G55620 860 / 0.0 chloride channel F (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00654 [flax] [poplar] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Lus10013858 pacid=23159488 polypeptide=Lus10013858 locus=Lus10013858.g ID=Lus10013858.BGIv1.0 annot-version=v1.0 ATGCATAGCCCGTCGCCATTGCAGCAGCTGCCTCGCCATTTCCATCCACCTCAGTTTCTCTTCGCTTCTTCTTCAGCCATCCATCGCTTTCCTTTCTTCC CTCTCCATCTTCCCTTTCCACTCCGACACTCCAAAATCAGCATCCGTAGAGCGACCCCGACGCTTCCCGGAAGCGGAGACGGTGGCAACAATCGAGTAGA AACAGAAAACGTTGAGCAAGTGAGAAGCTTAGCTGATGAAGAAAACAACAGCAGCAGGGCCGGAACCATCACTATAGATTCTGGAATCGTACTGTCTTCC TGCCTCGTCGGCCTCCTCACCGGCGTCGCAGTCGTCATCTTCAACAACGCGGTGCACGAAATACGCGACCTCTTATGGGACGGAATACCGTACCGGGGCG CATCCTGGTTACGAGAGGAGCCCCTTGACTCTATCTGGACTCGAGTCATCTTGGTCCCCGTTTCCGGTGGCTTGATAGTCGCCTTGTTGAACCTGCTCCG CTCTTCTCTTCCGGAATCGGACGCTCAGCGAAGTTCATCCGACGTTAGGAACCGATTCGCCGCTGTTCTCCGGCCTGTCTTGAAAGCTCTATCGGCTTCT TTCACCCTCGGGACCGGGAATTCACTAGGACCTGAAGGCCCTAGCGTCGAAATTGGGGCATCAATCGCCAAAGGAATAGGCTCACTCACTGCTTCGGAAC GAGACTCCAAGACGAAGCTCTCCCTCCGCGCTCCCTCCCTGCTTCGGACCGAGACTCCAAGACGAAGCTCTCCCTCCTCGCTGCTGGTTCCGCTGCTGGC CTCTCTTCTGGTAGTATTCTCCTCTGCATAA
AA sequence Show only first row Show all	>Lus10013858 pacid=23159488 polypeptide=Lus10013858 locus=Lus10013858.g ID=Lus10013858.BGIv1.0 annot-version=v1.0 MHSPSPLQQLPRHFHPPQFLFASSSAIHRFPFFPLHLPFPLRHSKISIRRATPTLPGSGDGGNNRVETENVEQVRSLADEENNSSRAGTITIDSGIVLSS CLVGLLTGVAVVIFNNAVHEIRDLLWDGIPYRGASWLREEPLDSIWTRVILVPVSGGLIVALLNLLRSSLPESDAQRSSSDVRNRFAAVLRPVLKALSAS FTLGTGNSLGPEGPSVEIGASIAKGIGSLTASERDSKTKLSLRAPSLLRTETPRRSSPSSLLVPLLASLLVVFSSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10013858 [exp]	0	1
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10007341 [exp]	3.2	0.8902
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10004009 [exp]	4.2	0.8777
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043198 [exp]	11.8	0.8673
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10027422 [exp]	13.5	0.8151
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10040917 [exp]	14.8	0.8401
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	16.4	0.8728
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10030285 [exp]	18.5	0.8425
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10002107 [exp]	19.2	0.8496
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10009813 [exp]	21.0	0.8306
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10008475 [exp]	21.1	0.8678

Compare expression of checked genes

Lus10013858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.