Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17390 414 / 2e-145 AKR2B ankyrin repeat-containing 2B (.1) AT4G35450 410 / 2e-144 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT2G03430 74 / 5e-15 Ankyrin repeat family protein (.1) AT3G23280 71 / 3e-13 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT2G47450 69 / 6e-13 CPSRP43, CAO CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) AT4G27780 67 / 3e-12 ACBP2 acyl-CoA binding protein 2 (.1) AT5G53470 67 / 3e-12 ACBP1 acyl-CoA binding protein 1 (.1) AT5G12320 61 / 2e-11 ankyrin repeat family protein (.1) AT2G28840 60 / 7e-10 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT2G25600 61 / 8e-10 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026575 [exp] 602 / 0 AT2G17390 427 / 2e-150 ankyrin repeat-containing 2B (.1) Lus10001605 [exp] 530 / 0 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10009696 [exp] 69 / 9e-14 AT5G12320 184 / 7e-61 ankyrin repeat family protein (.1) Lus10036033 [exp] 68 / 2e-13 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1) Lus10033896 [exp] 71 / 3e-13 AT3G23280 294 / 7e-96 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10020272 [exp] 70 / 8e-13 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10002621 [exp] 69 / 8e-13 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10009674 [exp] 67 / 7e-12 AT3G23280 499 / 6e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10023973 [exp] 66 / 1e-11 AT2G47450 391 / 2e-135 CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G210100 [exp] 533 / 0 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.004G210000 [exp] 533 / 0 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.010G161300 [exp] 78 / 2e-16 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.008G167600 [exp] 69 / 8e-13 AT3G23280 501 / 1e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.009G140500 [exp] 69 / 9e-13 AT2G47450 423 / 7e-148 CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) Potri.001G276100 [exp] 64 / 3e-12 AT5G12320 191 / 1e-63 ankyrin repeat family protein (.1) Potri.010G185200 [exp] 67 / 4e-12 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.002G213200 [exp] 67 / 4e-12 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.005G225300 [exp] 67 / 4e-12 AT3G23280 355 / 2e-118 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.009G070700 [exp] 63 / 6e-12 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10013859 pacid=23159459 polypeptide=Lus10013859 locus=Lus10013859.g ID=Lus10013859.BGIv1.0 annot-version=v1.0 ATGGCTTCCAACAAGGATCTCCCTCCGTCTGAAAGCAAAAGCGCAAAACCTGAAGCATCTGCAGCAGCACCAGAGACAGGGCCAGCAGCCGCTTCTGCTG CACCTGGAGCAGCTTTTGCTCCAAATCCTTTTGATTTCTCAGCAATGTCTGGCCTGCTTAATGATCCAAGCATTAAAGAACTTGCTGACCAGATAGCGAA AGATCCTTCATTTAACCAGATGGCAGAACAGCTGCAGAAAACATTTCAAGGAGGTGCAAATGTTGATGAAGGTATGCCGCAGTTTGATACACAGCAGTAC TATTCCACCATGCAGCAGGTTATGCAGAACCCCCAATTTATGGACATGGCTGAACGGCTTGGAAGTGCATTAATGCAGGATCCGTCCATGTCCCAAATGC TTGAACAGATGTCAAGCCCTGTACAAAAGGATCAAATGGAGGAAAGGATGGCCCGTCTAAAAGAAGACCCTTCTTTGAAGCCTATCTTGGAAGAGATAGA GAGTGGGGGTCCAGCTGCCATGATGAGATATTGGAATGATAAGGATGTTCTGAAGAAGTTGGGTGAAGCCATGGGTCTTGCAGTTCCTGGAGAAGCAGCC AGCTCAATTGAGAACTCTGGACAAGAGGAAGCTGAAGAAGGTGGAAATGACGATGAATCTGTTGTTCATAACTGTGCCAGCGTTGGGGATGTTGAGGGTC TAAAAGCTGCACTGACCGCTGGTGCCGATAAGGACGAAGAGGACTCCGAGGGAAGAACTGCATTGCATTTTGCATGTGGATACGGAGAGGACAAGTGTGC TCAAGTTCTCCTTGAAGCAGGAGCACAGGTTGATGCGCTGGACAAAAATAAGAACACTGCACTCCATTATGCAGCTGGTTACGGGAGAAAGGAGTGTGTA GCCCTTTTACTCGAGAATGGCGCTGCAGTAACTTTGCAAAACATGGACGGGAAGACTCCGATAGATGTTGCAAAGCTGAACAACCAGAACGAGGTTGTCA AGTTGCTCGAGAAGGATGCCTTCCTGTGA
AA sequence Show only first row Show all	>Lus10013859 pacid=23159459 polypeptide=Lus10013859 locus=Lus10013859.g ID=Lus10013859.BGIv1.0 annot-version=v1.0 MASNKDLPPSESKSAKPEASAAAPETGPAAASAAPGAAFAPNPFDFSAMSGLLNDPSIKELADQIAKDPSFNQMAEQLQKTFQGGANVDEGMPQFDTQQY YSTMQQVMQNPQFMDMAERLGSALMQDPSMSQMLEQMSSPVQKDQMEERMARLKEDPSLKPILEEIESGGPAAMMRYWNDKDVLKKLGEAMGLAVPGEAA SSIENSGQEEAEEGGNDDESVVHNCASVGDVEGLKAALTAGADKDEEDSEGRTALHFACGYGEDKCAQVLLEAGAQVDALDKNKNTALHYAAGYGRKECV ALLLENGAAVTLQNMDGKTPIDVAKLNNQNEVVKLLEKDAFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10013859 [exp]	0	1
AT2G17390		AKR2B	ankyrin repeat-containing 2B (...		Lus10026575 [exp]	1.0	0.8981
AT3G58730			vacuolar ATP synthase subunit ...		Lus10027271 [exp]	1.4	0.8636
AT4G26620			Sucrase/ferredoxin-like family...		Lus10022532 [exp]	14.9	0.6692
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10004963 [exp]	15.8	0.7768
AT2G36060		MMZ3 ,UEV1C	UBIQUITIN E2 VARIANT 1C, MMS Z...		Lus10004211 [exp]	17.3	0.7340
AT3G24100			Uncharacterised protein family...		Lus10007122 [exp]	19.6	0.7163
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10032835 [exp]	19.8	0.7616
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10036786 [exp]	23.1	0.7761
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030617 [exp]	24.1	0.7869
AT2G33220			GRIM-19 protein (.1)		Lus10023693 [exp]	24.4	0.7763

Compare expression of checked genes

Lus10013859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.