Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 148 / 3e-45 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 133 / 3e-39 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026576 [exp] 315 / 3e-110 AT2G15220 186 / 2e-58 Plant basic secretory protein (BSP) family protein (.1) Lus10013861 [exp] 217 / 6e-72 AT2G15220 209 / 3e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10026577 [exp] 212 / 1e-69 AT2G15220 202 / 4e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10026578 [exp] 210 / 5e-69 AT2G15220 209 / 7e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10013862 [exp] 176 / 5e-56 AT2G15220 154 / 7e-47 Plant basic secretory protein (BSP) family protein (.1) Lus10026586 [exp] 162 / 4e-50 AT2G15220 204 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10013869 [exp] 159 / 3e-49 AT2G15220 209 / 5e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10001359 [exp] 155 / 3e-47 AT2G15220 204 / 7e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10026585 [exp] 154 / 6e-47 AT2G15220 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 163 / 4e-51 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 157 / 1e-48 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 152 / 1e-46 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 149 / 1e-45 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 129 / 1e-37 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10013860 pacid=23159511 polypeptide=Lus10013860 locus=Lus10013860.g ID=Lus10013860.BGIv1.0 annot-version=v1.0 ATGCTGACGGCCACCGCTTTATCCTGGCGCGTGTTTGACCAGTTAGACTATTCCCATGCATCCCGCAGGAAACCAGTCCGCAAGATTGAGCTGGTACTCG TACCGTTGTCTTCATATTACCAGAACACTAGTACTGTTCGGTACGTTGCGTACGTGCGTAACGGCTCCGTCATTCAAATGGACTCCGATTACTTTGGAAC CTACAAGGGCGACCTCAAGCGGGAATTCGGTGGGTTGATGTACAAAGAAGTGGCGGGCATCCTGCAATGGAATGGTAACGGGGAGGCTCCGGTAGGAGTG ACGAGTGGGATATCAGATTACGTGAGGATGAAGGCAGGATTCGGCGGCAGCTTCGGCAGGGTGGCCGCGGGACAAGTTGCACGTTGGGACAGTGGGTACG ATATTACGGCCAGGTTTCTGGAACATTGCAACAAGCTCAAGAGAGGGTTCGTTGCGGAGCTTAACGCCAAGATGAGGAATGGTTACACTGTTGGGTATTC TAAGGATATCCTCGGCAAAACTGTGGATCAGCTCTAG
AA sequence Show only first row Show all	>Lus10013860 pacid=23159511 polypeptide=Lus10013860 locus=Lus10013860.g ID=Lus10013860.BGIv1.0 annot-version=v1.0 MLTATALSWRVFDQLDYSHASRRKPVRKIELVLVPLSSYYQNTSTVRYVAYVRNGSVIQMDSDYFGTYKGDLKREFGGLMYKEVAGILQWNGNGEAPVGV TSGISDYVRMKAGFGGSFGRVAAGQVARWDSGYDITARFLEHCNKLKRGFVAELNAKMRNGYTVGYSKDILGKTVDQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10013860 [exp]	0	1
AT5G53820			Late embryogenesis abundant pr...		Lus10003056 [exp]	5.7	0.6942
AT3G51810		AT3, GEA1, ATEM...	GUANINE NUCLEOTIDE EXCHANGE FA...		Lus10027816 [exp]	7.2	0.6631
AT3G13310			Chaperone DnaJ-domain superfam...		Lus10032957 [exp]	7.9	0.6304
AT1G51990			O-methyltransferase family pro...		Lus10005268 [exp]	7.9	0.6718
AT3G16175			Thioesterase superfamily prote...		Lus10006834 [exp]	8.1	0.6773
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10018433 [exp]	14.5	0.6366
					Lus10031558 [exp]	19.0	0.6265
AT3G04500			RNA-binding (RRM/RBD/RNP motif...		Lus10000555 [exp]	19.4	0.6366
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10039050 [exp]	22.4	0.6311
					Lus10012012 [exp]	25.7	0.6591

Compare expression of checked genes

Lus10013860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.