Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 222 / 3e-73 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 204 / 3e-66 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2) AT2G15170 54 / 2e-09 Plant basic secretory protein (BSP) family protein (.1) AT2G42900 43 / 8e-05 Plant basic secretory protein (BSP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026579 [exp] 439 / 1e-158 AT2G15220 226 / 1e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10019806 [exp] 226 / 2e-74 AT2G15220 279 / 8e-96 Plant basic secretory protein (BSP) family protein (.1) Lus10019807 [exp] 208 / 3e-67 AT2G15220 229 / 5e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10019803 [exp] 206 / 1e-66 AT2G15220 231 / 4e-77 Plant basic secretory protein (BSP) family protein (.1) Lus10019799 [exp] 205 / 3e-66 AT2G15220 199 / 2e-64 Plant basic secretory protein (BSP) family protein (.1) Lus10014106 [exp] 205 / 3e-66 AT2G15220 230 / 2e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10013866 [exp] 197 / 2e-63 AT2G15220 202 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10014111 [exp] 197 / 4e-63 AT2G15220 202 / 3e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10026582 [exp] 197 / 6e-63 AT2G15220 206 / 1e-66 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 238 / 2e-79 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 231 / 1e-76 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 231 / 2e-76 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 223 / 2e-73 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 205 / 1e-66 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.005G202300 [exp] 54 / 2e-08 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10013863 pacid=23159449 polypeptide=Lus10013863 locus=Lus10013863.g ID=Lus10013863.BGIv1.0 annot-version=v1.0 ATGTCTTCACACATTCTCCTCCTCCTAGTCCTCTCATCGGCCACCACATTCTTCCACAGCGGCCGATGCGACGGGGACATCGACTACGTAGTAATCAACA ACTCCCCCGACACACCGGGGGGAGGCCGGTTCATGGACGAGATCGGAGTCGACTACACAAGGTCGAAAATGTCATCCGCCACAGAATTCATCTTCGACAT CTTCCAACAACGCAACAACAACACGTCCGAGAGAAGAGAGTACAAGCAAGTGAAGCTATTCATCAATAAGTTCAACGCCGCCCAGGTGGCCTACACGGGC GAGAACGAGGTCTACTTCAGCGCTGACTTCATCGGGAACTACGCGGGCGGGGACCTGAAGAAAGAGTTCACCGGGGTGCTGTACAGGGAGATGGCGCACG TGTGGCAGTGGAACGGCGGCGGGAAGGCGCCGGCTGGTGTGGTGGAAGGGATCGCCGCTTACGTGCGGGTGAAGGCTGACCTGGCGCCTGATTATTGGGT GAAGCCTGGAGGTGGGGACAGGTGGGACCAAGGGTACGATGTTGCCGGGAGGTTTGTGGAGTATTGTGAGGGGGTTAGAAAAGGGTTTGTGGCGGAGATG AATAGGAAGATGAAGGATGGTTATAGCGAAGGGTATTTTGGTCAGGTTATGGGTGGGAAGAGTGTTGGGCAAGTTTGGAGTGAGTATAAGAAGAAGTATA CCAAAGTTGGCAGGGGAAGACAGTACTGA
AA sequence Show only first row Show all	>Lus10013863 pacid=23159449 polypeptide=Lus10013863 locus=Lus10013863.g ID=Lus10013863.BGIv1.0 annot-version=v1.0 MSSHILLLLVLSSATTFFHSGRCDGDIDYVVINNSPDTPGGGRFMDEIGVDYTRSKMSSATEFIFDIFQQRNNNTSERREYKQVKLFINKFNAAQVAYTG ENEVYFSADFIGNYAGGDLKKEFTGVLYREMAHVWQWNGGGKAPAGVVEGIAAYVRVKADLAPDYWVKPGGGDRWDQGYDVAGRFVEYCEGVRKGFVAEM NRKMKDGYSEGYFGQVMGGKSVGQVWSEYKKKYTKVGRGRQY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10013863 [exp]	0	1
AT2G26730			Leucine-rich repeat protein ki...		Lus10042135 [exp]	1.0	0.7005
AT4G39510		CYP96A12	"cytochrome P450, family 96, s...		Lus10018159 [exp]	4.5	0.6964
AT3G25280			Major facilitator superfamily ...		Lus10025881 [exp]	9.8	0.6845
AT4G04980			unknown protein		Lus10033704 [exp]	11.0	0.6221
AT3G53240		AtRLP45	receptor like protein 45 (.1)		Lus10043328 [exp]	21.4	0.5769
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10027881 [exp]	41.0	0.5247
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10042436 [exp]	49.6	0.5495
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10020822 [exp]	78.8	0.5085
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10026347 [exp]	103.0	0.5038
					Lus10022112 [exp]	113.4	0.4731

Compare expression of checked genes

Lus10013863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.