Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48840 850 / 0 Plant protein of unknown function (DUF639) (.1) AT3G18350 850 / 0 Plant protein of unknown function (DUF639) (.1) AT5G23390 484 / 3e-162 Plant protein of unknown function (DUF639) (.1) AT2G21720 263 / 2e-77 Plant protein of unknown function (DUF639) (.1) AT1G71240 212 / 2e-58 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026581 [exp] 1274 / 0 AT1G48840 870 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10020973 [exp] 1043 / 0 AT1G48840 899 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10010155 [exp] 471 / 9e-157 AT5G23390 781 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10010668 [exp] 287 / 7e-87 AT2G21720 775 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10007431 [exp] 283 / 1e-85 AT2G21720 767 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10002408 [exp] 218 / 1e-60 AT1G71240 941 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10027905 [exp] 201 / 5e-54 AT1G71240 806 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G046500 [exp] 1011 / 0 AT1G48840 942 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.012G055800 [exp] 993 / 0 AT1G48840 894 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.008G003000 [exp] 494 / 5e-166 AT5G23390 730 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.013G062700 [exp] 292 / 1e-88 AT2G21720 839 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.001G210200 [exp] 242 / 2e-69 AT1G71240 968 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF04842 [flax] [poplar] DUF639 Plant protein of unknown function (DUF639)
Representative CDS sequence Show only first row Show all	>Lus10013865 pacid=23159422 polypeptide=Lus10013865 locus=Lus10013865.g ID=Lus10013865.BGIv1.0 annot-version=v1.0 ATGGCTACAACAAGCAAGACTAGAAACATGCTTGAGGGTTTAGTAAGAGAAGGATCCTTTAAATGGATCCTTGGGAAGAAGACTCATTTTGATGAAGAAT TCGAGGAAATGGGAAGGTCACCTTCTGCTAAAAAGAACTGGATTACAGAGCTATCTCCTCTTGCTAATCTGGTTGTCTCTAGATCTTCGAAAATCCTTGG CACATCTCCAACCAGCCTCAAAGAAAGTTTCAACAGGGAAGCTTCTGACTCCATAAAGCACCCATCTCACTATGCCAGGAACTTCTTGGAATACTGTTGC TTTATGACATTGGCTGTTTCCATTCAGAAAACCGGTCACCTGGGGGATAAGAAGTTCCGACGATTGGCTTACGATATGATGTTAGCTTGGGAGACTCCAG CTGCTACCAGTGAACCCTTAGCTAATGTAGATGAAGACCTTACAGTTGGTCGTGAGGCCTTTTCTCGGATAGCCCCAGCCGTTCCGATCATTGCAAATGT TGTTATTAGTGAAAATCTGTTTCAAGTGCTGACTGGGTCAACTGATGGGCGGCTTCAGTTTTCTATCTTTGACAAATACCTAAGTGGATTAGAAAGATCA GTCAAAAAGATGATATCTCAATCCGATTCATCACTCCTTTCTGAAGCCCGGTCAGCAAAAAGAGAGAGAATTTTAGAAGTGGAAGGGACTGTCACCACCC AACCAGTTCTTGAGCATGTTGGAGTATCTACATGGCCAGGTCGCTTAGTTCTTACAGATCATGCCTTGTACTTTGAAGCACTTCGTGTTGTTTCCTATGA CAAACCAAAAGTATATGATCTGTCAGAAGACATGAAGCAAGTCGTTAAACCTGAATTAACTGGACCGTGGGGAACACGGCTTTTTGACAAAGCAGTTTTT TACAGCTCTGTTTCTTTATCGGAACCTGCTATTATAGAGTTCCCTGAGCTAAAAGGACATACACGTCGGGATTATTGGCTTGCAATCATGCGTGAAATTT TGCTGGTTCACAAATTCATAAGAAAGTTCCAAATCTCAGGAGTAGCACGGGATGAGGCTCTTTCAAAAGCTGTACTTGGAATCTTGCGTTTACAAGCCAT TCAAGAACTTAGTTCTACAGACATTCGGCATGAAGATATTCTCCTGTTTAATCTGTGTGAAGAACTCCCTGGCGGAGATTTGATTCTAAAAACTCTGGCA ACTATGTCTTCTGTAAAGAAAGCAGAGTCAACTAACCATTACAAGAATGGAGGTGGAATGTATTCAGCCTCATCAATGGCCATGGTTACTGGTTTAGGAT TTGTATTCGGAACAAAGTCCAGTGATCCTAATGTAACTGCACTTGCAGTTGGTGAGGTGGCTGTTGGTGAAATGAGTTCTTTGGAAAGAGCAGTCAGAGA ATCAAAGGACAGCTACAAAAAAGTGGTTGTAGCACAAGCAACTGTGGATGGAGTTAAAGTTGACGGCCTTGACACTAATCTGGCAGTGATGAAGGACTTG CTGCTCCCTGTAATGGAGGTTGGGAAGTGGCTTCTTTCATTGCTGTATTGGGATGACTCGAAGAACTCCCTGGTTTTCTGCTTGGTTGTGTCCTTTCTCA TCTGGAGGGGATGGTTGAGTTATGTTTTTGCGCTGATGCTCGCTTTGCTGGGAGTGCTGATGCTGATTACCCGGTTTATGAACCAAGGCCGGCCTGTTGA TGAACTGAAGGTAATAACACCACCACCAATGAACACAGTGGAACAGCTTCTGGCTGTTCAGAACGCGATTTCGCAGGTGGAACAGCTAATCCAGGATGGG AACATTGGCCTGCTCAAGGTCCGAGCTTTGCTACTGGCCGTCTTCCCCCAAGCAAGCGATAAATTTGCAGTAGCACTTTTGGGGTTCGGGCTAGTGTTGG CCATTTTACCAATGAAGTATGTACTTTTGTTGAGCTTCCTGGATGTATCGACGAGGTACTCACCCGCAAGAAGAGATAGCACGGAGAGATTCGAAAGGCG TGTGAGAGAGTGGTGGTTCAGCATACCTGCAGCGCCGGTGCTACTTGACAGAGAACAAGATGAGAAGAAAAAGAAGTAG
AA sequence Show only first row Show all	>Lus10013865 pacid=23159422 polypeptide=Lus10013865 locus=Lus10013865.g ID=Lus10013865.BGIv1.0 annot-version=v1.0 MATTSKTRNMLEGLVREGSFKWILGKKTHFDEEFEEMGRSPSAKKNWITELSPLANLVVSRSSKILGTSPTSLKESFNREASDSIKHPSHYARNFLEYCC FMTLAVSIQKTGHLGDKKFRRLAYDMMLAWETPAATSEPLANVDEDLTVGREAFSRIAPAVPIIANVVISENLFQVLTGSTDGRLQFSIFDKYLSGLERS VKKMISQSDSSLLSEARSAKRERILEVEGTVTTQPVLEHVGVSTWPGRLVLTDHALYFEALRVVSYDKPKVYDLSEDMKQVVKPELTGPWGTRLFDKAVF YSSVSLSEPAIIEFPELKGHTRRDYWLAIMREILLVHKFIRKFQISGVARDEALSKAVLGILRLQAIQELSSTDIRHEDILLFNLCEELPGGDLILKTLA TMSSVKKAESTNHYKNGGGMYSASSMAMVTGLGFVFGTKSSDPNVTALAVGEVAVGEMSSLERAVRESKDSYKKVVVAQATVDGVKVDGLDTNLAVMKDL LLPVMEVGKWLLSLLYWDDSKNSLVFCLVVSFLIWRGWLSYVFALMLALLGVLMLITRFMNQGRPVDELKVITPPPMNTVEQLLAVQNAISQVEQLIQDG NIGLLKVRALLLAVFPQASDKFAVALLGFGLVLAILPMKYVLLLSFLDVSTRYSPARRDSTERFERRVREWWFSIPAAPVLLDREQDEKKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18350			Plant protein of unknown funct...		Lus10013865 [exp]	0	1
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10017490 [exp]	8.1	0.8630
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10032543 [exp]	11.7	0.8482
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	16.7	0.8565
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10028842 [exp]	18.2	0.8189
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	18.3	0.8394
AT3G14810		MSL5	mechanosensitive channel of sm...		Lus10005555 [exp]	19.2	0.8264
AT5G20300		Toc90	translocon at the outer envelo...		Lus10006471 [exp]	19.5	0.8338
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	20.8	0.8475
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	27.3	0.8310
AT2G25320			TRAF-like family protein (.1)		Lus10001490 [exp]	32.8	0.8396

Compare expression of checked genes

Lus10013865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.