Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 194 / 2e-62 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 164 / 1e-50 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026582 [exp] 410 / 3e-147 AT2G15220 206 / 1e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10019806 [exp] 202 / 2e-65 AT2G15220 279 / 8e-96 Plant basic secretory protein (BSP) family protein (.1) Lus10013869 [exp] 194 / 4e-62 AT2G15220 209 / 5e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10026586 [exp] 190 / 3e-60 AT2G15220 204 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 184 / 2e-58 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10013863 [exp] 184 / 5e-58 AT2G15220 224 / 9e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10026584 [exp] 184 / 5e-58 AT2G15220 201 / 6e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10019807 [exp] 182 / 2e-57 AT2G15220 229 / 5e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10026585 [exp] 181 / 3e-57 AT2G15220 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 217 / 1e-71 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 213 / 4e-70 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 213 / 1e-69 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 211 / 4e-69 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 192 / 1e-61 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.005G202300 [exp] 54 / 1e-08 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10013866 pacid=23159462 polypeptide=Lus10013866 locus=Lus10013866.g ID=Lus10013866.BGIv1.0 annot-version=v1.0 ATGGCGGCGGAAGTAAACTACACAGTAATAAACAACGCAGCCAACACCAACGGAGGAAGGCGATTCGACCGCCGAATCGGCACAAACTACACCCTCCAAG CCATGTCCGCCGCCTCCTACTTCATCTGGGACCTCTTCGACCAAACAAACAACAACACCAACATCACTCAGCAACAACAACGTCGGGACTACCAAAACGT GACCCTCTACATCGACCCGATGGACGGCAAGGAAGGCGTGTCGGCCTACGCGAAAGACAATGCCGTCCACGTCAGCGCCAGCTACATCGGCAACTACACT GGGAACGTGAAAAAGGAGTTCACGGGGGTGCTGTACCACGTGTTGGCGTACACGTGGATGTGGGACGGCGACGGCACGGCCCCACAAGGGCTGAAGTCCG GGATGGCCGAGTTCGTTAGGCTGAAGGCTCATTACGCTCCCCGGATGGTCGGGATGGGTCCCGGGAGGACGGATAATTGGGACGAAGGGTACGGAGTGAC GGCCATGTTTTTGGACTACTGTAACAACTTGAAAGACGGGGTGTTTGTGGCGGAGTTGAACGGGAAGATGAAGGATGGGTATAGCCGAGGGTATTTTAGG GAGTTGCTTGGGAAATCTGTTGATGTTTTGTGGCAGGATTATAAGTCTAAGTATCTCTTGGCTTGA
AA sequence Show only first row Show all	>Lus10013866 pacid=23159462 polypeptide=Lus10013866 locus=Lus10013866.g ID=Lus10013866.BGIv1.0 annot-version=v1.0 MAAEVNYTVINNAANTNGGRRFDRRIGTNYTLQAMSAASYFIWDLFDQTNNNTNITQQQQRRDYQNVTLYIDPMDGKEGVSAYAKDNAVHVSASYIGNYT GNVKKEFTGVLYHVLAYTWMWDGDGTAPQGLKSGMAEFVRLKAHYAPRMVGMGPGRTDNWDEGYGVTAMFLDYCNNLKDGVFVAELNGKMKDGYSRGYFR ELLGKSVDVLWQDYKSKYLLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10013866 [exp]	0	1
					Lus10013266 [exp]	4.5	0.7665
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10026894 [exp]	6.8	0.7846
					Lus10041357 [exp]	13.7	0.7678
AT5G01900	WRKY	ATWRKY62, WRKY6...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10022736 [exp]	18.3	0.7768
AT1G06450			Polynucleotidyl transferase, r...		Lus10000327 [exp]	34.5	0.7674
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10035231 [exp]	40.5	0.7365
AT4G32020			unknown protein		Lus10001940 [exp]	41.7	0.7407
AT4G29780			unknown protein		Lus10011946 [exp]	42.3	0.7613
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10032372 [exp]	44.8	0.7571
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10023099 [exp]	47.5	0.7566

Compare expression of checked genes

Lus10013866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.