Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 213 / 1e-69 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 198 / 6e-64 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026585 [exp] 433 / 2e-156 AT2G15220 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1) Lus10026584 [exp] 346 / 7e-122 AT2G15220 201 / 6e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10013867 [exp] 338 / 7e-119 AT2G15220 201 / 1e-64 Plant basic secretory protein (BSP) family protein (.1) Lus10001359 [exp] 324 / 4e-113 AT2G15220 204 / 7e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10013869 [exp] 318 / 8e-111 AT2G15220 209 / 5e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10026586 [exp] 315 / 2e-109 AT2G15220 204 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10001607 [exp] 313 / 1e-108 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1) Lus10001358 [exp] 310 / 8e-108 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1) Lus10001608 [exp] 280 / 2e-96 AT2G15220 182 / 2e-58 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 230 / 3e-76 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 227 / 3e-75 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 224 / 7e-74 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 215 / 1e-70 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 200 / 2e-64 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.005G202300 [exp] 65 / 4e-12 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10013868 pacid=23159479 polypeptide=Lus10013868 locus=Lus10013868.g ID=Lus10013868.BGIv1.0 annot-version=v1.0 ATGTCCAGCCAGATATTTACATTACTTATAATCACTCTGTTGACCGCCGTTGTCAGCAGTCAAGCATTCAAATCCGGAAGCCCGGTCCTGTACACGGTCA CCAACACGGCCAACCAAACAGCCGGCGGGGCCAGATTCGACAAACAGATTGGGGCCCACAGCGCCAAGCAGACCATGTACGCCGCCACCCGCTTCGTCTG GATTCTCTTCAACCAGACCGACGACCCGGCCCAACGGAAGAACATAACCCAGATCGACCTCTTCATCGACGACATGGGCCAAAACGGCACCGCTGTAGCG CGTACAAGCAACGCGTCCATCCACCTCAGTGCCGAGTTCATCGGGAGCTACGCCGCCAACCTTCGGAGGCAGTTCAACGGGATAATGTACCAGGAGGTTG CAGGGATCTGGCAGTGGGACGCGCGTGGACAGGCGCCGGCCGGGTTGGTGAGCGGGATTGCGCATTACGCGAGGCTGCAGGCGCGTTACGGGACAGTGGA GAAGGTGAAGCCCGGAGAAGGAGAGCGGTGGGACCAAGGGAACGGCGTTACGGCGAGGTTCCTGACATATTGCAATCAGTTGAAGAGAGGGTTCGTCGGG GAGCTGAATAAGAAGATGAGGAATGGATACAGCGATGGGTTCTTCATGGACTTGCTTGGGAAGAATGTTGAGCATTTGTGGAGTAACTACAAAGAGACCT ACCACATGTAG
AA sequence Show only first row Show all	>Lus10013868 pacid=23159479 polypeptide=Lus10013868 locus=Lus10013868.g ID=Lus10013868.BGIv1.0 annot-version=v1.0 MSSQIFTLLIITLLTAVVSSQAFKSGSPVLYTVTNTANQTAGGARFDKQIGAHSAKQTMYAATRFVWILFNQTDDPAQRKNITQIDLFIDDMGQNGTAVA RTSNASIHLSAEFIGSYAANLRRQFNGIMYQEVAGIWQWDARGQAPAGLVSGIAHYARLQARYGTVEKVKPGEGERWDQGNGVTARFLTYCNQLKRGFVG ELNKKMRNGYSDGFFMDLLGKNVEHLWSNYKETYHM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10013868 [exp]	0	1
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026595 [exp]	9.2	0.7514
AT3G03430			Calcium-binding EF-hand family...		Lus10033587 [exp]	14.1	0.7458
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10038911 [exp]	14.6	0.7356
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10042023 [exp]	15.8	0.7439
AT1G70260			nodulin MtN21 /EamA-like trans...		Lus10010696 [exp]	15.9	0.7263
AT4G16160		ATOEP16-2, ATOE...	Mitochondrial import inner mem...		Lus10037743 [exp]	19.7	0.6800
AT4G17350			Plant protein of unknown funct...		Lus10004734 [exp]	25.3	0.6067
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10034729 [exp]	25.3	0.7049
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10015307 [exp]	25.8	0.7350
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10027270 [exp]	28.6	0.6501

Compare expression of checked genes

Lus10013868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.