Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 209 / 4e-68 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 196 / 5e-63 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2) AT2G42900 50 / 3e-07 Plant basic secretory protein (BSP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026586 [exp] 457 / 1e-165 AT2G15220 204 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10001359 [exp] 325 / 4e-113 AT2G15220 204 / 7e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 323 / 1e-112 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1) Lus10026585 [exp] 316 / 6e-110 AT2G15220 207 / 2e-67 Plant basic secretory protein (BSP) family protein (.1) Lus10026584 [exp] 313 / 9e-109 AT2G15220 201 / 6e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10013867 [exp] 305 / 3e-105 AT2G15220 201 / 1e-64 Plant basic secretory protein (BSP) family protein (.1) Lus10001607 [exp] 293 / 1e-100 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1) Lus10001358 [exp] 291 / 4e-100 AT2G15220 192 / 2e-61 Plant basic secretory protein (BSP) family protein (.1) Lus10001608 [exp] 287 / 5e-99 AT2G15220 182 / 2e-58 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 219 / 7e-72 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 218 / 2e-71 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 213 / 1e-69 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 205 / 3e-66 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 191 / 1e-60 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10013869 pacid=23159429 polypeptide=Lus10013869 locus=Lus10013869.g ID=Lus10013869.BGIv1.0 annot-version=v1.0 ATGGCTCCTCAAACTTCCGTCTCATCCATTTGTGTGCTGATCATAGCAGCCACCTTGGCCATCACCTCTCAAGCAGTAGCTGAAGATTCCCACACGGTAT CATACATCGTACTAAACACTGCCAACCACACCGCGGGTGGGGGCCGATTCGACAAGCAAATCGGGGCACTGACTGCAGTCCAAACAATGGTCGCGGCCAC AAACTTCACGTGGACCATATTCAACCAGTCCAACCACCCATCCGAAAGAAAAAACATAACCGAAATCACATTATTCATCGACGGCGACTACTCGCCGAAC CTCCCCGCGACCCACACGAAGAACACGTCGATCCACATCGACGCGAATTTCATCGGGAACTACACCGCCAACCTGAGGAGGCAGTTCAACGGCATAATCT ACCAGGAGATAGCCGGAATTTGGCAGTGGACCGGAAAGGGCCAGGCTCCAGATGGGCTCGTGACGGGGATAGCCCATTATGTGAGGCTTCAGGCCCGTTA CGGAACCATTGAGAAAGTGAAGCCCGGAGAAGGGGACCGTTGGGATCAAGGTAACGGCGTTACCGCGAGGTTTCTGGATTACTGCAATAAACTGAAGAGA GGGTTCGTCGGGGAGCTGAACCAGAAGATGAGGCACGGTTATACTGATGGGTATTTTATGGAGATTTTGGGGAAGCCGGTTGATCTTCTGTGGAGTAATT ATAAGGAGAGGCATGGGCTTGATCGTCAAGGCCATCATCAGTAA
AA sequence Show only first row Show all	>Lus10013869 pacid=23159429 polypeptide=Lus10013869 locus=Lus10013869.g ID=Lus10013869.BGIv1.0 annot-version=v1.0 MAPQTSVSSICVLIIAATLAITSQAVAEDSHTVSYIVLNTANHTAGGGRFDKQIGALTAVQTMVAATNFTWTIFNQSNHPSERKNITEITLFIDGDYSPN LPATHTKNTSIHIDANFIGNYTANLRRQFNGIIYQEIAGIWQWTGKGQAPDGLVTGIAHYVRLQARYGTIEKVKPGEGDRWDQGNGVTARFLDYCNKLKR GFVGELNQKMRHGYTDGYFMEILGKPVDLLWSNYKERHGLDRQGHHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10013869 [exp]	0	1
AT5G28640		ATGIF1, GIF1, A...	ARABIDOPSIS GRF1-INTERACTING F...		Lus10005524 [exp]	2.8	0.9700
AT1G31310	Trihelix		hydroxyproline-rich glycoprote...		Lus10040629 [exp]	4.6	0.9761
AT5G61190	C2H2ZnF		putative endonuclease or glyco...		Lus10003476 [exp]	6.3	0.9441
AT2G24440			selenium binding (.1)		Lus10026958 [exp]	9.5	0.9558
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10003335 [exp]	10.0	0.9391
AT3G03210			unknown protein		Lus10007384 [exp]	11.7	0.9155
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Lus10013762 [exp]	11.8	0.9338
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010694 [exp]	11.9	0.9664
AT4G31350			Core-2/I-branching beta-1,6-N-...		Lus10020159 [exp]	14.2	0.9324
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10013874 [exp]	16.1	0.9621

Compare expression of checked genes

Lus10013869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.