Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44750 1019 / 0 ATREV1, REV1 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2) AT1G49980 130 / 8e-31 DNA/RNA polymerases superfamily protein (.1) AT5G44740 120 / 1e-27 POLH Y-family DNA polymerase H (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041155 [exp] 169 / 1e-48 ND 38 / 0.001 Lus10020986 [exp] 122 / 4e-28 AT1G49980 768 / 0.0 DNA/RNA polymerases superfamily protein (.1) Lus10036237 [exp] 111 / 9e-25 AT5G44740 765 / 0.0 Y-family DNA polymerase H (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G094400 [exp] 1221 / 0 AT5G44750 1071 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, DNA-directed DNA polymerases (.1.2) Potri.001G293600 [exp] 133 / 1e-31 AT1G49980 826 / 0.0 DNA/RNA polymerases superfamily protein (.1) Potri.003G152600 [exp] 113 / 2e-25 AT5G44740 775 / 0.0 Y-family DNA polymerase H (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain CL0459 [flax] [poplar] PF00817 [flax] [poplar] IMS impB/mucB/samB family CL0459 [flax] [poplar] PF11799 [flax] [poplar] IMS_C impB/mucB/samB family C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013870 pacid=23159473 polypeptide=Lus10013870 locus=Lus10013870.g ID=Lus10013870.BGIv1.0 annot-version=v1.0 ATGAGCTTCGATTCATCTCGTTCGGGCGCCAATTCGGCCCAGCGATCAAAGAGAAGCATGACGCACTCATCCAAAACCGGCAGCGGTAGCAATTCCAAGA GGAGCAAAATCAGTAGCAAGCAGAAAACTCTAGGAATGGCTTGGGGCGCCAATTCTCTCTCGTCCTCTCGCTCCTCGTTCCGCAACTCTCCGTTCTCTGA CTTCGGAAGTTATATGTCCGAGAAGACGCGGAAACTCCGCCAACAATTTGATGCCGAAGCTTCTAATCCTTCGGACTCGAGTTCCAAGCAGCTGATTTTT CAAGGGGTATCAATATTTATTGATGGTTTCACCGTTCCGTCAAATCAGGAACTGAGAAGCTACATGTTGGCATTTGGAGGGCGATTTGAGAATTACTTCT CTAGGCATCGTGTCACCCACATTATCTGCAGCAATCTTCCTGACTCTAAAATAAAAAATATGAGGTCCTTCAGTGCTGGGTTGCCAGTAGTTAAACCTGC TTGGATTGTGGACTCTGTGTTTGCTAATAGGCTCTTGAATTGGGTTCCTTACCAGCTCGATCAGCTTGGTGACAACCAGCCCCGGCTTTCAGCTTTCTTT ACCTCTAAATGCAGCTCACCGGATGAAGTTGCAGTTGGAGTTGCAGGTTGTCAAATGATTACAGATCCAGGTTTAGACGGTGGCACATCAAAGAATGTAG ATCTTCCAGAAGCACATCAATCACTAAATGTTTCTCAGCAAGACACTTTGGTAGTTAGGGATTCTCAAATGAATCCGGATTCATCTGTGTTAGCTGGCAC AACTATGAGTGGTGGTTTTTCTGAAATGCACGAATCCACAAGCATTACCACTGACGAGAATCCACAACTTGATAGTCAGTACGGTATTGAGGTGCCAAGC AGTAGCAAATCGTTAGATCTAAGGGCCGAAGTACTTGGTGATTCTGACACGGAGAGTGAAACAAATGTAGGCAACATACCTCATCTTACTTCTGATCATC TCTCTGACCCAGTTAGCATGCAAGGTATGCATAATCAAAGTAAAGGAGGAACAAATACAAGTGGTGTTGTAATCTCTAATCAACATCACTCAACCCTCGG GGATCCCAATTTTGTGGAGAACTATTTCAAGAGTTCAAGGCTTCACTTCATAGGAACATGGAGAAGTCGATATCGTAAGCGTTATGGCAACAAGTCCAAT GATCTTAAACGTCACAATGCAAATGGTGGTGTCTCGGATGCTTCTCGCAGAACTGCTGTTATCCATATTGATATGGACTGCTTCTTTGTCTCTGTAGTCA TCAGGAATCATGCTGAGCTGCAAGACAAACCTGTAGCAATATGTCATTCGGACAATCCGAAAGGAACTGCTGAAATATCCTCGGCAAATTATCCTGCCCG GAACTTTGGAATTAAGGCTGGAATGTTTGTTAGAGAAGCAAAAGCTCGTTGTCCAGATCTTATCATCTTCCCCTACAACTTCCAAGCCTATGAGGAGGTA GCTGATAAATTCTATGACATATTACATAAGCACTGCACTAAAGTACAGGCAGTAAGCTGTGATGAAGCATTTTTGGAAGTGGCGCATTCAGCAGGTTTGG ATCCTGAGCTCATAGCTTCAGAGATAAGAAAGGAGATTTGTGTGACCACAGGCTGCACTGCAAGTGCTGGTATTGCTGTAAACATGCTTATGGCACGGCT AGCTACAAGAGCTGCCAAACCTAATGGCCAATGCTACATCCCACAGGAGAAGGTGGATGAGCACTTACAACTACTTCCAATCAAGACACTCCCTGGAATA GGTCATGTCTTAGCAGAGAAGTTAAAGAATCGCAACATTCAGACTTGTGGACAGTTGCGTTTGATTTCCAAGGGCTCTCTTCAAAGGGACTTTGGAGCAA AAACTGGAGAGATGCTGTGGAATTACAGTAGGGGGGTGGATAATCGATTAGTTGGAGTCAATCAGGAAAGCAAGTCCATTGGTGCTGAAGTAAATTGGGG TGTCAGGTTCAAGGCTTTGGAAGATAGTCACCGTTTCTTGGCGGACCTTTGCAAGGAAGTTTCTCTTCGTTTACAGGGATGTGGAGCACGAGGCCGCACT TTTACTCTCAAGGTTAAGAATAGAAGAAAAGATGCCGGTGAGCCAGTTAAGTATATGGGACATGGTGATTGCGAGAATTTGAGTCACTCCATGACGATTC CTATTGCTACCGATGAGATAAACGTGCTTGAAAGAATAGCCAAGCAGCTCTTTGGGTGCTTCCACGTGGATGTCAAAGATATTCGTGGCGTTGGGTTGCA AGTTTCGAAGCTTGAAAATGCAGATGCTTCTAATGAAGGGCTTGAAAGAAATTCTTTGAGGTCATGGCTCAGTTCTGCTTCAGCAAATAAAGCGGAACAG AGGGTTACCAGTGATGTCGTGAAAGAATGTAGCGGTAGAGAATTCTTAGATTCTGGCATAAAGAGCATCGGAGGAACTTCTCGACAATTATTTCCTGATC AATTGGGTTCTGCACAAATAGACAGCAATGTACAAAATGATGAACCTTGTCTCAGTGATGTCTCCGCTCCACCACCTTTAAGCGATCTCGATATTGGAGT TGTCAAGAATCTTCCACCAGAAATCTTCTCAGAGTTAAATCATATTTATGGAGGGAAGTTGATAGCTCTTATCAATAAAAGCAAGGGAAAAAATCAAATT TCTAGTAACTCGCCATGCACTGGAGCACCAGATGAGGAAGCATGTCCAAATCTTGTTTCTGGGGCGGGATCTGATAGCCGGGGAATTCATCAAGGGTTTG CTGGAGATATTGATTTGATGCCTTCATCATTAAGCCAGGTCAATGTATCGGTGTTGCATGAATTGCCCAAAGAGTTGAGAGCTGACATAGTAGGACTCCT TCCTGCACACAGAAAGCAAGAACCCCCACCAACTGCTGTCTTAGATGCTCATGCAGATAATGCTGAAGAATTCACAGTAATAAAAACTACTGACGACCAA TCTAAACCACCAGAAGATGATTTCAGCAATAATCTGTTGAGTGGAAATCCCCCACGGTGGGTTGATAAGTTTAGAGTCAGCAACTGCGTGATACTCAACA CTCTGGCAGAGATTTACGGCAAACGGGGCCCAACCGTGAACCTCTCGACTTTGTTGCAGCACTTAAATTCTGCATACTTGCTCCCTTCTGATCAAGGTGT TGATGTTTGGTGTGATGAAGCTACTTCCGACTTCTGCGACCTTCTTACCCAGTACATTAAAATAAACCTACAGTCCGATATTGAAGAAATATATTTGTGT TTCCGGCTTCTTCGAAGGTTGTCTGAGAAGTGGAAACCTATTTTACAAGTATACAATATCGTCTTTCCTTATCTCCAGGTGATTCGTTACTTCTTCTTTG TTGGTTACCTTGCACTTGTTTTCCGAGTGATTTGTCAATTAGATATAAAATCGTGCTTCAAATTCTGA
AA sequence Show only first row Show all	>Lus10013870 pacid=23159473 polypeptide=Lus10013870 locus=Lus10013870.g ID=Lus10013870.BGIv1.0 annot-version=v1.0 MSFDSSRSGANSAQRSKRSMTHSSKTGSGSNSKRSKISSKQKTLGMAWGANSLSSSRSSFRNSPFSDFGSYMSEKTRKLRQQFDAEASNPSDSSSKQLIF QGVSIFIDGFTVPSNQELRSYMLAFGGRFENYFSRHRVTHIICSNLPDSKIKNMRSFSAGLPVVKPAWIVDSVFANRLLNWVPYQLDQLGDNQPRLSAFF TSKCSSPDEVAVGVAGCQMITDPGLDGGTSKNVDLPEAHQSLNVSQQDTLVVRDSQMNPDSSVLAGTTMSGGFSEMHESTSITTDENPQLDSQYGIEVPS SSKSLDLRAEVLGDSDTESETNVGNIPHLTSDHLSDPVSMQGMHNQSKGGTNTSGVVISNQHHSTLGDPNFVENYFKSSRLHFIGTWRSRYRKRYGNKSN DLKRHNANGGVSDASRRTAVIHIDMDCFFVSVVIRNHAELQDKPVAICHSDNPKGTAEISSANYPARNFGIKAGMFVREAKARCPDLIIFPYNFQAYEEV ADKFYDILHKHCTKVQAVSCDEAFLEVAHSAGLDPELIASEIRKEICVTTGCTASAGIAVNMLMARLATRAAKPNGQCYIPQEKVDEHLQLLPIKTLPGI GHVLAEKLKNRNIQTCGQLRLISKGSLQRDFGAKTGEMLWNYSRGVDNRLVGVNQESKSIGAEVNWGVRFKALEDSHRFLADLCKEVSLRLQGCGARGRT FTLKVKNRRKDAGEPVKYMGHGDCENLSHSMTIPIATDEINVLERIAKQLFGCFHVDVKDIRGVGLQVSKLENADASNEGLERNSLRSWLSSASANKAEQ RVTSDVVKECSGREFLDSGIKSIGGTSRQLFPDQLGSAQIDSNVQNDEPCLSDVSAPPPLSDLDIGVVKNLPPEIFSELNHIYGGKLIALINKSKGKNQI SSNSPCTGAPDEEACPNLVSGAGSDSRGIHQGFAGDIDLMPSSLSQVNVSVLHELPKELRADIVGLLPAHRKQEPPPTAVLDAHADNAEEFTVIKTTDDQ SKPPEDDFSNNLLSGNPPRWVDKFRVSNCVILNTLAEIYGKRGPTVNLSTLLQHLNSAYLLPSDQGVDVWCDEATSDFCDLLTQYIKINLQSDIEEIYLC FRLLRRLSEKWKPILQVYNIVFPYLQVIRYFFFVGYLALVFRVICQLDIKSCFKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013870 [exp]	0	1
AT3G21480			BRCT domain-containing DNA rep...		Lus10037907 [exp]	2.0	0.8936
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10016745 [exp]	2.2	0.8743
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	3.7	0.8883
AT5G40270			HD domain-containing metal-dep...		Lus10022228 [exp]	4.2	0.8316
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	5.3	0.8798
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10018994 [exp]	5.5	0.8827
AT5G04050			RNA-directed DNA polymerase (r...		Lus10038971 [exp]	6.0	0.7866
AT5G67620			unknown protein		Lus10011549 [exp]	6.3	0.8001
AT5G54860			Major facilitator superfamily ...		Lus10017090 [exp]	9.7	0.7792
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10000912 [exp]	12.1	0.8477

Compare expression of checked genes

Lus10013870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.