Plant FIBer expression Database

Lus10013871 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35040 986 / 0 AICARFT/IMPCHase bienzyme family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023871
[exp]
1115 / 0 AT2G35040 976 / 0.0 AICARFT/IMPCHase bienzyme family protein (.1.2)
Lus10014374
[exp]
1090 / 0 AT2G35040 945 / 0.0 AICARFT/IMPCHase bienzyme family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G114400
[exp]
994 / 0 AT2G35040 992 / 0.0 AICARFT/IMPCHase bienzyme family protein (.1.2)
Potri.008G128301
[exp]
89 / 1e-21 AT2G35040 84 / 2e-20 AICARFT/IMPCHase bienzyme family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02142 MGS MGS-like domain
CL0109 CDA PF01808 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme
Representative CDS sequence
>Lus10013871 pacid=23159507 polypeptide=Lus10013871 locus=Lus10013871.g ID=Lus10013871.BGIv1.0 annot-version=v1.0
ATGACCAGTAACTGTGCGCACCGCAACAGTACTTCCGTCCTTCTTCGCCAAGGAAAGACCCTTGCCTCTATCATTTCATCCCCTCCGTCGGCTTCAGTTT
GCTTCCTTCAAGTTCCAGCTACTTCACCTCCACGCATTGCACTGAAAGCCATGAGCGAGTCTCAAGCCATTCCAGTTTCAAATTACGAGTCTCAAGCTGT
TGTTTCTCCTCCTGGCGGAAAACAGGCTCTGATATCTTTATCGGATAAAAAGGACTTGGCTTTTCTTGGTAATGGGCTACAAAGTCTAGGGTACACCATT
GTATCAACAGGAGGTACAGCATCTGCTTTGGAAAGTGCTGGAGTGGCTGTTACTAAAGTGGAGCAGTTGACCCATTTCCCGGAAATGCTTGATGGACGTG
TGAAAACATTGCACCCCAACGTTCATGGTGGCATCCTTGCCAGAAGGGATCAAAAGCATCACATGGAAGATCTTAATTCCCATGGAATTGGTACTTTTGA
TATTGTAGCGGTAAACTTGTATCCCTTCTATGATAAAGTTACTGCAACTGGAGGAATCAAATTTGAGGATGGAATTGAGAATATTGATATTGGCGGTCCC
ACCATGATACGAGCAGCTGCTAAGAATCATAAGGATGTCTTGGTTGTCGTGGACTCAGAAGATTATGCTGCTCTATTAGAGTTTCTCAAAGAAAATCAAG
ATGATGAACAATTTCGTAGAAAGCTTGCCTGGAAGGCTTTTCAACATGTTGCTTCTTATGATTCAGCAGTTTCCGAGTGGCTCTGGAAGCAAACTGATGG
AGAAAATAAGTTCCCGCCAAACTTCACTGTTCCCCTCTCACTTAAGAGCTCTCTCCGGTATGGTGAAAATCCACACCAAAAGGCCGCATTTTATGTTGAC
AAGAGTATATCAGAGGTGAATGCTGGTGGTATTGCAACTGCTATCCAACACCATGGAAAGGAAATGTCTTACAATAACTATTTAGATGCGGATGCAGCTT
GGAATTGTGTTTCAGAGTTTGAGAGCCCTACATGTGTTATTGTGAAGCATACAAATCCTTGTGGTGTGGCTTCTCGTAGCGACATCTTGGAAGCATATAG
GCTGGCTGTAAAGGCAGACCCAGTCAGTGCATTTGGTGGTATTGTTGCTTTCAATACAGAAGTTGACGAGGACCTTGCAAAGGAACTCCGGGAGTATAGA
AGCCCTACCGATGGAGAAACGCGAATGTTCTACGAAATTGTGGTTGCTCCCAAGTATACAGAGAAGGGGCTCGAGACCCTCCGCGGGAAGTCGAAGACAT
TGAGGATCCTGGAGGCGAGAAAGAACGAGAAAGGAAAGCTTTCCCTAAGGCAAGTTGGTGGCGGGTGGTTGGCCCAAGAATCAGATGACTTAACCCCAGA
AGATATCCAGTTCAAGGCCATGGGCGAGAAGTCAACAGACGAAAGTGTGCTAAGCGATGCCAAGTTTGCGTGGCTTTGCGTCAAACACGTGAAGAGCAAT
GCAATTGTGATAGCAAAGAATAACTGCATGCTAGGCATGGGGAGCGGGCAGCCGAACCGTGTGGAGAGCTTGAGAATAGCGATGCGAAAGGCAGGAGACG
AGGTGAAAGGAGCTGCATTGGCGAGCGATGCCTTCTTCCCCTTTGCTTGGAATGATGCGGTGGAAGAGGCATGTCAGGCTGGGATCGGCGTTATTGCAGA
GCCTGGTGGTAGCATCAGAGATCAGGATGCAATAGATTGCTGCAACGAGTATGGCGTCTCCTTGCTCTTTACCAACGTTAGGCATTTTAGGCACTGA
AA sequence
>Lus10013871 pacid=23159507 polypeptide=Lus10013871 locus=Lus10013871.g ID=Lus10013871.BGIv1.0 annot-version=v1.0
MTSNCAHRNSTSVLLRQGKTLASIISSPPSASVCFLQVPATSPPRIALKAMSESQAIPVSNYESQAVVSPPGGKQALISLSDKKDLAFLGNGLQSLGYTI
VSTGGTASALESAGVAVTKVEQLTHFPEMLDGRVKTLHPNVHGGILARRDQKHHMEDLNSHGIGTFDIVAVNLYPFYDKVTATGGIKFEDGIENIDIGGP
TMIRAAAKNHKDVLVVVDSEDYAALLEFLKENQDDEQFRRKLAWKAFQHVASYDSAVSEWLWKQTDGENKFPPNFTVPLSLKSSLRYGENPHQKAAFYVD
KSISEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFESPTCVIVKHTNPCGVASRSDILEAYRLAVKADPVSAFGGIVAFNTEVDEDLAKELREYR
SPTDGETRMFYEIVVAPKYTEKGLETLRGKSKTLRILEARKNEKGKLSLRQVGGGWLAQESDDLTPEDIQFKAMGEKSTDESVLSDAKFAWLCVKHVKSN
AIVIAKNNCMLGMGSGQPNRVESLRIAMRKAGDEVKGAALASDAFFPFAWNDAVEEACQAGIGVIAEPGGSIRDQDAIDCCNEYGVSLLFTNVRHFRH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G35040 AICARFT/IMPCHase bienzyme fami... Lus10013871
[exp]
0 1
AT1G65900 unknown protein Lus10007381
[exp]
1.0 0.9726
AT3G17465 RPL3P ribosomal protein L3 plastid (... Lus10033666
[exp]
2.0 0.9578
AT3G04600 Nucleotidylyl transferase supe... Lus10026754
[exp]
3.9 0.9577
AT1G58370 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE ... Lus10007242
[exp]
4.9 0.9445
AT2G34480 Ribosomal protein L18ae/LX fam... Lus10023454
[exp]
5.5 0.9600
AT2G33840 Tyrosyl-tRNA synthetase, class... Lus10032773
[exp]
5.5 0.9529
AT4G24490 ATRGTA1 RAB geranylgeranyl transferase... Lus10001518
[exp]
5.9 0.9388
AT1G23170 Protein of unknown function DU... Lus10021774
[exp]
7.3 0.9425
AT5G48490 Bifunctional inhibitor/lipid-t... Lus10038233
[exp]
7.7 0.9582
AT1G58370 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE ... Lus10028242
[exp]
7.7 0.9562

Lus10013871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.