Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 92 / 2e-20 F-box family protein (.1) AT5G10340 66 / 1e-11 F-box family protein (.1) AT4G12560 65 / 3e-11 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G25460 64 / 3e-11 F-box and associated interaction domains-containing protein (.1) AT1G47790 62 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT4G21240 59 / 2e-09 F-box and associated interaction domains-containing protein (.1) AT5G47300 59 / 2e-09 F-box and associated interaction domains-containing protein (.1) AT1G51290 58 / 5e-09 F-box and associated interaction domains-containing protein (.1) AT1G12870 57 / 7e-09 F-box and associated interaction domains-containing protein (.1) AT3G16210 56 / 2e-08 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013873 [exp] 130 / 5e-34 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10026587 [exp] 127 / 9e-33 AT3G06240 104 / 3e-24 F-box family protein (.1) Lus10037892 [exp] 100 / 2e-23 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10038606 [exp] 100 / 2e-23 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10008871 [exp] 94 / 6e-21 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038603 [exp] 93 / 1e-20 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10023238 [exp] 87 / 9e-19 AT3G23880 126 / 6e-33 F-box and associated interaction domains-containing protein (.1) Lus10023239 [exp] 74 / 2e-14 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1) Lus10008870 [exp] 72 / 2e-13 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262900 [exp] 110 / 4e-27 AT4G12560 107 / 5e-26 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 110 / 8e-27 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.008G006800 [exp] 104 / 9e-25 AT4G12560 100 / 4e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G121200 [exp] 102 / 7e-24 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G006900 [exp] 94 / 5e-21 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 92 / 3e-20 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G011400 [exp] 81 / 1e-16 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014300 [exp] 81 / 2e-16 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.010G207500 [exp] 80 / 3e-16 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G012200 [exp] 79 / 8e-16 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10013872 pacid=23159485 polypeptide=Lus10013872 locus=Lus10013872.g ID=Lus10013872.BGIv1.0 annot-version=v1.0 ATGTCCGACTACATCCCTCAAGACGTCCTCGCCGAAATTCTCCTCAGACTACCAGTCAAATCCCTTCTCCGATTCAGATCCGTCTCCAAGTCATGGTACT CCATCATATCCTCCCCTGCCTTCGTTTCCCTCTACTCCGGCGAACACCTCCACCGCCGCCGTCCAACTCAATTCCTCTTCAGTCGTTATGTCAACTCCTT CACGCAAATCCTCACGTTTCATCCCGACGACAACTTCTTCCCTACCAAGCAAGAGCAAATTCCCTGGCCCTTCCATTACCCCAGCAACTTCCACATCGTC GGTTCCTGCAACGGTCTCCTCTGCATCTTCTTCCGCCAGAGCGGAGCTCTATGTTTATGGAACCCGGCAATCCGGAAGCACCTCACTGTCGAACTCCCGC CGGAGATGATCATAGGCGGCAGACGTAGAAACAGATATACGGCGTTCATGTTCGGGTTCGTAGCCAACGAATACAAAATTGCGACGATTGAGGGCTCGTA CTTTGGGAACACGTTCATTACCTACCACGGAGGCGGGACAAATATGTATATGTACGAGCTGAGCAAGAATTCGTGGAGGAAGAAGGAAACAGATTCAAAT TCGAAGCTGGTCGAGTCAAACGGGTCGGGTCAGGTGTCGTACAACGGAGCTGTCCACTGGATCGGGCGTGACGTCCGGAGGGGAGGATTGGAGGAGGAGA ATCGGAGGTGGAAAGTAATCTGTTTCGACATGGGAAATGAATGTTACAGAGAGATGGGGTTACCGGAGGGGCTGTCGTCGGACGAGGAGATGGAGTTTTC GTTGACCGTGACGGAAACGATGTCGTTTGGGCTGGTTCAGTTCAAGTTGTGGGATTCAGGATGTGGAATCTGGGCGATGGAGGAGTACGGGGAAGCGAGG TCGTGGAAGAAGATTCTGGCCGTGGACTTGAGGTTTGAGGGAGGAACGATGAGGAACGTGGTTGTGAAGAGGGTGGTCTTCAGGGAGAAGAAGAAGAGGA AGAATGGAAACGGAGGGATGCTTCTGTTGACGGCGACGATGGAAGTAGGAAGTTATGACGGCGATGGAGGGAGTGGGCGAGTGGTATCGGTCGGCGAGGA TGGGAAACGCGTGCAGATCGTCGACGTCAATACCTACCGGGAGAGCCTCGCTTTGCTGTTATGA
AA sequence Show only first row Show all	>Lus10013872 pacid=23159485 polypeptide=Lus10013872 locus=Lus10013872.g ID=Lus10013872.BGIv1.0 annot-version=v1.0 MSDYIPQDVLAEILLRLPVKSLLRFRSVSKSWYSIISSPAFVSLYSGEHLHRRRPTQFLFSRYVNSFTQILTFHPDDNFFPTKQEQIPWPFHYPSNFHIV GSCNGLLCIFFRQSGALCLWNPAIRKHLTVELPPEMIIGGRRRNRYTAFMFGFVANEYKIATIEGSYFGNTFITYHGGGTNMYMYELSKNSWRKKETDSN SKLVESNGSGQVSYNGAVHWIGRDVRRGGLEEENRRWKVICFDMGNECYREMGLPEGLSSDEEMEFSLTVTETMSFGLVQFKLWDSGCGIWAMEEYGEAR SWKKILAVDLRFEGGTMRNVVVKRVVFREKKKRKNGNGGMLLLTATMEVGSYDGDGGSGRVVSVGEDGKRVQIVDVNTYRESLALLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10013872 [exp]	0	1
AT2G23140			RING/U-box superfamily protein...		Lus10032023 [exp]	2.8	0.8682
AT4G40070			RING/U-box superfamily protein...		Lus10043426 [exp]	13.4	0.8609
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004926 [exp]	13.7	0.8423
AT3G17950			unknown protein		Lus10006150 [exp]	15.5	0.8200
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10036067 [exp]	17.1	0.8402
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10029405 [exp]	18.0	0.8525
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042241 [exp]	18.7	0.8032
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042242 [exp]	22.3	0.8356
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	23.0	0.8419
AT3G09050			unknown protein		Lus10027783 [exp]	26.6	0.8376

Compare expression of checked genes

Lus10013872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.