Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 100 / 5e-23 F-box family protein (.1) AT3G07870 90 / 1e-19 F-box and associated interaction domains-containing protein (.1) AT4G12560 89 / 2e-19 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G23880 72 / 7e-14 F-box and associated interaction domains-containing protein (.1) AT4G22390 71 / 3e-13 F-box associated ubiquitination effector family protein (.1) AT3G10430 67 / 3e-12 F-box and associated interaction domains-containing protein (.1) AT1G47790 67 / 3e-12 F-box and associated interaction domains-containing protein (.1) AT3G08750 65 / 2e-11 F-box and associated interaction domains-containing protein (.1) AT1G33530 63 / 9e-11 F-box family protein (.1) AT3G16210 63 / 1e-10 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026587 [exp] 610 / 0 AT3G06240 104 / 3e-24 F-box family protein (.1) Lus10038606 [exp] 152 / 4e-42 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10037892 [exp] 150 / 2e-41 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10013872 [exp] 146 / 5e-40 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10038603 [exp] 129 / 2e-33 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10031020 [exp] 105 / 3e-25 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10008871 [exp] 104 / 8e-25 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10039593 [exp] 93 / 7e-22 AT4G12560 75 / 9e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10012355 [exp] 89 / 3e-19 AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262900 [exp] 160 / 1e-45 AT4G12560 107 / 5e-26 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G121200 [exp] 157 / 3e-44 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 132 / 1e-34 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G207500 [exp] 115 / 1e-28 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.003G145950 [exp] 109 / 1e-26 AT4G12560 113 / 7e-28 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.014G162600 [exp] 108 / 6e-26 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.008G006900 [exp] 106 / 3e-25 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014300 [exp] 104 / 1e-24 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.015G013800 [exp] 104 / 1e-24 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G006800 [exp] 100 / 4e-23 AT4G12560 100 / 4e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10013873 pacid=23159492 polypeptide=Lus10013873 locus=Lus10013873.g ID=Lus10013873.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCTTCTTCTTCACTTCATGAAGAAATGCTGATAGACATCCTCACAAGACTGCCACCCAAATCCCTCCTCCGTTGCCTCTCCGTCTCCAAAT CCTTCCACTCTCTCATCACCACCCCAACCTTCATCTCAGCCCACATAACTCGCCGCCGCCGCCGCCGGAAACTCCTCCTCCGTCACTACTCATGGAGCCA CGCGAAAGAGCGATTCACAATTCATAATCCCGATTACAGCTTTTTCAGCAGTCAAGAAGAGGAGCTGGATTTCGGGTTCCAAAGCTACGCCAAGTACTTC GAGATAGTCGGGTCGGTTAACGGGTTGCTATGCCTCTGCGACACCCACCGGGTCAATTCCCACACCGTCTACCTATGGAACCCTACGATCAGAAAATCTA TCGTCCTGCCGCCTCCATCCGTCGATTTCAAACGGGTCTCGAATTTCGTCCACGGGTTTGGGTTCGATTCGGGCACCCGGGACTACAAGGTCGTGAAAGT CACTTATCCTTCGCATTTAACGGTCTCTTCCCCGGAAATTGAAATCTACGAACTGAGCAAAAACTCGTGGAGAAAGGGGAGAACAGAAAGTGATGATGAA ACGACGCCGTATTGTAACCGGGTGATTTCCGAACTCTCGGGGCAGGCTTTCCTTCATGGAGCGATCCACTGGGTCGGGTACAGCAATCGGGCCGAGTTCA GGGGTTTGGGAATCGTGGCGTTGGATTTGGAAAGTGAGGGATTCCGAGAATTGAAGCTGCCGGAGTGTTTGGTTGAGCTGTCTACGCTTAAGTTGGGGTT AATGACGGGGGCGGAATCGGAGGAAGAGCTTAGTTTGGTGGAGTATTACGGCGGAGGAGTGAGGCGGAATCAGTGGGTTCAGCATGGCGGGTGCGGAGTG TGGGTGATGAGGGAGTACGGAGTGGAGTCGTCCTGGATGAAGAGGTTTAATGTTGAAGTTTGTGAAGGCGGAGTTGGGAAAGCGCTGAGGCTAAGGAAGG ATGAGGAATCGGCAGTGGGATTGTTGATGGCGTCTAGCAGCGGGGAGATGGTTTGTTTGAATGGCGATGGTGGAATTGTTGAGTTGGGGATGGAAGGGAT ACCGCAGTCGTTCCATTTGGAGGATCTTACTGAGACCTTGGTCTTGATCTGA
AA sequence Show only first row Show all	>Lus10013873 pacid=23159492 polypeptide=Lus10013873 locus=Lus10013873.g ID=Lus10013873.BGIv1.0 annot-version=v1.0 MSSSSSSLHEEMLIDILTRLPPKSLLRCLSVSKSFHSLITTPTFISAHITRRRRRRKLLLRHYSWSHAKERFTIHNPDYSFFSSQEEELDFGFQSYAKYF EIVGSVNGLLCLCDTHRVNSHTVYLWNPTIRKSIVLPPPSVDFKRVSNFVHGFGFDSGTRDYKVVKVTYPSHLTVSSPEIEIYELSKNSWRKGRTESDDE TTPYCNRVISELSGQAFLHGAIHWVGYSNRAEFRGLGIVALDLESEGFRELKLPECLVELSTLKLGLMTGAESEEELSLVEYYGGGVRRNQWVQHGGCGV WVMREYGVESSWMKRFNVEVCEGGVGKALRLRKDEESAVGLLMASSSGEMVCLNGDGGIVELGMEGIPQSFHLEDLTETLVLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10013873 [exp]	0	1
AT2G26660		ATSPX2	ARABIDOPSIS THALIANA SPX DOMAI...		Lus10002908 [exp]	4.4	0.8316
AT3G27250			unknown protein		Lus10032077 [exp]	10.9	0.7970
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10038923 [exp]	17.1	0.7904
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027211 [exp]	20.0	0.7741
AT3G05670			RING/U-box protein (.1)		Lus10000086 [exp]	20.4	0.7209
AT3G63220			Galactose oxidase/kelch repeat...		Lus10042607 [exp]	20.9	0.7763
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10012556 [exp]	21.0	0.7591
AT1G67600			Acid phosphatase/vanadium-depe...		Lus10006432 [exp]	23.7	0.7616
AT1G08315			ARM repeat superfamily protein...		Lus10039500 [exp]	25.1	0.7788
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027210 [exp]	25.8	0.7760

Compare expression of checked genes

Lus10013873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.