Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19500 151 / 1e-43 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G49830 127 / 7e-35 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31730 117 / 6e-32 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 114 / 8e-31 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G29100 117 / 6e-30 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G20640 117 / 2e-29 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 112 / 3e-28 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G61660 112 / 5e-28 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G27660 112 / 1e-27 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G31050 105 / 4e-25 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026589 [exp] 349 / 1e-120 AT3G19500 112 / 6e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025599 [exp] 115 / 1e-31 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10027064 [exp] 115 / 1e-31 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10007613 [exp] 119 / 5e-31 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 116 / 9e-30 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10010638 [exp] 115 / 9e-29 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023669 [exp] 113 / 2e-28 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10038550 [exp] 114 / 3e-28 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041649 [exp] 106 / 2e-26 AT2G31730 117 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G094300 [exp] 167 / 7e-50 AT3G19500 161 / 2e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G299300 [exp] 153 / 1e-44 AT3G19500 152 / 4e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G051600 [exp] 132 / 7e-36 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 130 / 3e-35 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G126800 [exp] 123 / 1e-34 AT1G05710 192 / 4e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G083700 [exp] 125 / 2e-33 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G230800 [exp] 127 / 3e-33 AT1G27660 247 / 3e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G112000 [exp] 120 / 3e-33 AT1G05710 180 / 2e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.004G029100 [exp] 125 / 3e-32 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G033000 [exp] 122 / 3e-31 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013874 pacid=23159486 polypeptide=Lus10013874 locus=Lus10013874.g ID=Lus10013874.BGIv1.0 annot-version=v1.0 ATGGCTGATGATGACCACCACCACCGCCACCACCATCATCAGACCACCGCAGTTACTAGTAGTGCTGTTGCTTTTCCTCATCATCAGGAACAAGAACTTC ATGGTGAGCAGGAAGATGACAATGGTGGCGAGGAGGATCTGTTGTTAACAGATGGGCCCAACCACCACCACCCCACCACCTTCTCTCAGCTTCTCTTCTC CAGTCATCATCAACCCCACAATGCTTCAGCAGCTACTACTTCTAGTTTTGGTCTAAACGACATTAATAGTATTTATAACCTCCACAACAACAACACAAGC AGCTCTTACCCACCTCAAATGCTCTGCTTTGGCTCTACTGATCCTCAAGGTGTCGTCTGTGTCCTCCCTTCTCCTAAAATCAACACCACTTCCTCCTCTA ATAGGAAACGAGAAGGGTTGACCCCGGAACAGAGTCTTAACTCTGTTGCGGTTACTAGTAGTAATGCTACGGACAGTACTGATTGTGGTCCTCCTCCACC GGAAGCAAGGCAGAGGGCTAGCAAGAGGAGTAGGACTGACAAGTCCACTCCTTCTCCAAGGCCAAGGAAAGAGAAGCTTGGAGAAAGGATTGCCACATTG CAGCAGTTGGTTTCACCTTTTGGCAAGACGGATACAGCATCAGTACTGCATGAAGCGATGGGATACATAAGGTTCCTGCAAGACCAGATTCAGGTCCTCT GCTCCCCTTACCTCCAATCTCCACCTCCTTCAACATCTGCTGCTTCACCCCAGGAAGGTAATCATGGCGTGTTGGATAACAAGAACAAGAAGAGAGAGCT GAGGAGCAGAGGGCTGTGTCTGGTCCCGGTGGAGTGCACAATCCACGTAGCTAACAGCAACAATGGTGCCGATTTCTGGTCACCAGCTGCTGCTGCTGCC ATGGGGACCAACCATAATATCACCTCTACTACTACTGCCACTAGTAGTTGCTTTCTATCACTGCCAACCACGCAGTAA
AA sequence Show only first row Show all	>Lus10013874 pacid=23159486 polypeptide=Lus10013874 locus=Lus10013874.g ID=Lus10013874.BGIv1.0 annot-version=v1.0 MADDDHHHRHHHHQTTAVTSSAVAFPHHQEQELHGEQEDDNGGEEDLLLTDGPNHHHPTTFSQLLFSSHHQPHNASAATTSSFGLNDINSIYNLHNNNTS SSYPPQMLCFGSTDPQGVVCVLPSPKINTTSSSNRKREGLTPEQSLNSVAVTSSNATDSTDCGPPPPEARQRASKRSRTDKSTPSPRPRKEKLGERIATL QQLVSPFGKTDTASVLHEAMGYIRFLQDQIQVLCSPYLQSPPPSTSAASPQEGNHGVLDNKNKKRELRSRGLCLVPVECTIHVANSNNGADFWSPAAAAA MGTNHNITSTTTATSSCFLSLPTTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10013874 [exp]	0	1
AT1G31310	Trihelix		hydroxyproline-rich glycoprote...		Lus10040629 [exp]	2.0	0.9882
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10026589 [exp]	2.4	0.9880
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	2.8	0.9906
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10015653 [exp]	5.0	0.9873
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032098 [exp]	6.3	0.9627
AT3G60670			PLATZ transcription factor fam...		Lus10009283 [exp]	6.7	0.9619
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10036953 [exp]	6.9	0.9826
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10018717 [exp]	7.2	0.9875
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010694 [exp]	9.2	0.9855
AT2G42560			late embryogenesis abundant do...		Lus10002197 [exp]	12.8	0.9830

Compare expression of checked genes

Lus10013874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.