Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19025 478 / 1e-164 DNA repair metallo-beta-lactamase family protein (.1) AT1G27410 90 / 3e-19 DNA repair metallo-beta-lactamase family protein (.1) AT2G45700 81 / 1e-15 sterile alpha motif (SAM) domain-containing protein (.1) AT1G66730 67 / 3e-11 AtLIG6 DNA LIGASE 6 (.1) AT3G26680 55 / 1e-07 SNM1, ATSNM1 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038078 [exp] 67 / 2e-11 AT2G45700 767 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Lus10033580 [exp] 61 / 2e-09 AT1G66730 456 / 1e-146 DNA LIGASE 6 (.1) Lus10017623 [exp] 60 / 4e-09 AT1G66730 1584 / 0.0 DNA LIGASE 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G106700 [exp] 610 / 0 AT1G19025 571 / 0.0 DNA repair metallo-beta-lactamase family protein (.1) Potri.006G218300 [exp] 68 / 8e-12 AT2G45700 732 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Potri.014G139600 [exp] 63 / 2e-10 AT3G26680 556 / 0.0 SENSITIVE TO NITROGEN MUSTARD 1, DNA repair metallo-beta-lactamase family protein (.1.2.3) Potri.004G094200 [exp] 63 / 3e-10 AT1G66730 1656 / 0.0 DNA LIGASE 6 (.1) Potri.013G149650 [exp] 61 / 7e-10 AT1G27410 396 / 5e-137 DNA repair metallo-beta-lactamase family protein (.1) Potri.013G121700 [exp] 54 / 5e-08 AT1G27410 315 / 3e-107 DNA repair metallo-beta-lactamase family protein (.1) Potri.013G121201 [exp] 45 / 3e-06 AT1G27410 100 / 1e-26 DNA repair metallo-beta-lactamase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0398 [flax] [poplar] RMMBL_DRMBL PF07522 [flax] [poplar] DRMBL DNA repair metallo-beta-lactamase
Representative CDS sequence Show only first row Show all	>Lus10013876 pacid=23159419 polypeptide=Lus10013876 locus=Lus10013876.g ID=Lus10013876.BGIv1.0 annot-version=v1.0 ATGCCGATAGAGATGCCCAGAGGGCTGCCGTTGTCGGTGGACACATGGAGTGCGAGATCCAACGCGAAACGGTACCATTTCTTGACTCACGCCCACAAGG ATCACTCGTCTGGAATCTTGTCCCACTCTTCTTACCCTATTTACTGCACCACTCTCACGAAATCGCTTCTTCTGAACCAATACCCTCAGCTGGATGATTC TATGTTCGTGAGCATTGAAGTTGGACAATCAGTACTCATAGATGATCCATACGGGGAATTCTCTGTTGCAGCTTTTGATGCCAATCACTGCCCAGGAGCT GTGATGTTCTTATTTGAAGGCAACTTTGGAAATATCTTACACACAGGAGACTGTAGGCTTACCCCGGAGTGTCTTTATTGTTTGCCTGAAAAGTATACAA GTAGGAAAGGGAAACAGCCTACTCAGAGACTAGATTATGTTTTCTTGGATTGCACCTTCGGAAAGTTCCGCTATCCCCTCCCAAGCAAGCGTTCATCAAT TCAGCAGGAGGATATATTGGCCGATGTGTCGCGGGCATTTGGTTCCAAGATATTTGTGGATAGTGCTGCTAACCCTGAGTGCTTTGGAGCTCTGTCAGTT ACAGTGCCTGAGATCCTTACCAGAGATGCATCTTGTCGTTTTCATGTGTTTGATGGGTTCCCCAATCTATACAAACGAGCAGCGACTAAACTTGCTGAGG CTGAAGCCAATTCTCAGCCCGAGCCTCTTATTGTCCGTGCTTCGGCTCAGTGGTATGCGTGTGATGAAGAGTACTCCTGCACTGGAAGTGAGGGAAAATT GAGGTTTGATACAACAGTGAAAGACCAATTTGGTGTTTGGCATATATGCTATTCCATGCATTCATCCAAAGAAGAACTGGAGTGGGCTCTTCAACTTCTA GCACCAAGATGGGTTGCATCAACTACTCCTGAATGCCCCGCCATGGAGTTAGATTATGTTAAAAAGCACTGCCTGGCTAGTCGGTTAACTGCGGGTGACC CTATATGGAAGCTTCTTGACATTTGTGCGGACACTTCCTCTAGCGAAGATATTCTGACACAAGGTGCAGCCCATAATCCTGTGATTGAACAGCCTGCTGT AGTGCTTGTACAATCCCCTCAAAAATTGAAGAACGGGTCTGCTAGAACGCCTAATAATTTGCCTCTATCCGATGGGCCAACGGTTACATTATTTGGTAGA GCTAGATTAAGGATTGAAGAATCCTTTTTCCTACCTGCAGAAAAAGTTCAACCAAGAGGAGATAAATGTGCGCAAGTTGTTCCAGATAAGATAGAAAAGG AGCTTAAAGTTGAAATAGCCCTTGACAAGAGCAATGAGATGGAAGAAGTGAATCAAGTGGAGCTTAGTGTCACTGCACGACACCTTGAAGAGCAAACCGA AGATGCCTCTAGTAGTTCTTGCGCTAATATTGGATTCTCAAGCATTTTCGGGGAAAGCATGAAGAGGTACTACAGGTCCATGAACGTGCCTGTTCCTCGT CCCCTTCCATCGTTGTTAAAACTTATTGACAATGACCGGAGAAAAAAGAGGAGATTTGGGTCTTGA
AA sequence Show only first row Show all	>Lus10013876 pacid=23159419 polypeptide=Lus10013876 locus=Lus10013876.g ID=Lus10013876.BGIv1.0 annot-version=v1.0 MPIEMPRGLPLSVDTWSARSNAKRYHFLTHAHKDHSSGILSHSSYPIYCTTLTKSLLLNQYPQLDDSMFVSIEVGQSVLIDDPYGEFSVAAFDANHCPGA VMFLFEGNFGNILHTGDCRLTPECLYCLPEKYTSRKGKQPTQRLDYVFLDCTFGKFRYPLPSKRSSIQQEDILADVSRAFGSKIFVDSAANPECFGALSV TVPEILTRDASCRFHVFDGFPNLYKRAATKLAEAEANSQPEPLIVRASAQWYACDEEYSCTGSEGKLRFDTTVKDQFGVWHICYSMHSSKEELEWALQLL APRWVASTTPECPAMELDYVKKHCLASRLTAGDPIWKLLDICADTSSSEDILTQGAAHNPVIEQPAVVLVQSPQKLKNGSARTPNNLPLSDGPTVTLFGR ARLRIEESFFLPAEKVQPRGDKCAQVVPDKIEKELKVEIALDKSNEMEEVNQVELSVTARHLEEQTEDASSSSCANIGFSSIFGESMKRYYRSMNVPVPR PLPSLLKLIDNDRRKKRRFGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19025			DNA repair metallo-beta-lactam...		Lus10013876 [exp]	0	1
AT5G43400			Uncharacterised conserved prot...		Lus10041147 [exp]	3.9	0.6760
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10016565 [exp]	8.9	0.6661
AT2G30350			Excinuclease ABC, C subunit, N...		Lus10042228 [exp]	38.4	0.6087
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10019243 [exp]	63.6	0.5954
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10017137 [exp]	68.4	0.5999
AT2G42490			Copper amine oxidase family pr...		Lus10019485 [exp]	89.9	0.5897
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10043127 [exp]	110.9	0.5842
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10035318 [exp]	120.4	0.5311
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10025054 [exp]	144.2	0.5670
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013804 [exp]	227.2	0.5522

Compare expression of checked genes

Lus10013876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.