Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03670 112 / 4e-27 ankyrin repeat family protein (.1) AT4G03500 100 / 3e-23 Ankyrin repeat family protein (.1) AT4G03460 97 / 5e-22 Ankyrin repeat family protein (.1) AT4G03450 90 / 1e-19 Ankyrin repeat family protein (.1) AT2G31820 90 / 2e-19 Ankyrin repeat family protein (.1) AT1G07710 89 / 2e-19 Ankyrin repeat family protein (.1) AT2G01680 87 / 9e-19 Ankyrin repeat family protein (.1) AT5G15500 87 / 1e-18 Ankyrin repeat family protein (.1.2) AT4G03490 84 / 1e-17 Ankyrin repeat family protein (.1.2) AT4G03480 84 / 2e-17 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026590 [exp] 148 / 5e-43 AT1G34050 52 / 6e-08 Ankyrin repeat family protein (.1) Lus10026833 [exp] 111 / 7e-27 AT4G03500 107 / 4e-04 Ankyrin repeat family protein (.1) Lus10020209 [exp] 108 / 1e-25 AT1G03670 175 / 6e-47 ankyrin repeat family protein (.1) Lus10041537 [exp] 92 / 1e-20 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10027074 [exp] 90 / 9e-20 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 91 / 1e-19 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 86 / 3e-18 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10037894 [exp] 84 / 2e-17 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10005432 [exp] 84 / 2e-17 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G108000 [exp] 168 / 3e-47 AT4G03500 126 / 3e-30 Ankyrin repeat family protein (.1) Potri.019G107700 [exp] 155 / 9e-43 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G107800 [exp] 147 / 8e-40 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G105900 [exp] 146 / 3e-39 AT4G03500 129 / 2e-31 Ankyrin repeat family protein (.1) Potri.019G108200 [exp] 146 / 4e-39 AT4G03500 114 / 2e-26 Ankyrin repeat family protein (.1) Potri.019G106300 [exp] 141 / 5e-38 AT4G03500 100 / 2e-22 Ankyrin repeat family protein (.1) Potri.019G107000 [exp] 141 / 2e-37 AT4G03500 140 / 5e-35 Ankyrin repeat family protein (.1) Potri.019G106000 [exp] 139 / 2e-36 AT4G03460 109 / 8e-25 Ankyrin repeat family protein (.1) Potri.011G133300 [exp] 123 / 5e-31 AT1G03670 250 / 6e-75 ankyrin repeat family protein (.1) Potri.011G133400 [exp] 122 / 1e-30 AT4G03500 251 / 3e-75 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10013878 pacid=23159498 polypeptide=Lus10013878 locus=Lus10013878.g ID=Lus10013878.BGIv1.0 annot-version=v1.0 ATGAGCGACACAGCATTGCACGAGGCAGTAAGAAATAATCACGTTGGTCCCAATGGCCGAACTCCTTTGCATGCTGCAACAATCAATGGCGATGCTGAAT TGACAAGAATGATACTAGAATTGAACAGTGGTGTCAGCAAAGATGTTGACCAGCAAGGATGGACTCCCCTGCATCATGCTTCGCACTTTGCTCATCTATC AATTGTGAAACAACTACTTGAATCCGACAAGTCTGCTGCGTATATTCAAGACGAAGATGAAGGGTCCGCTTCACATTGCAGCTGGCACGGTGATGATACG CACGTAGAAATTATGGAAGTCATGATATCACACTGCCCGGACAGCTGTGAAGCTGTTGCCAGAAGGGGTAGGAACGCACTTCACTACGCTGCGGAGAGCT ATTCTACTAAAGGGTTGAAGATTCTGTTAAGCAATCCTTTCTCGTCAGCTGAAATGATAAATCAGAAAGATTGTGAAGGGAACACGCCCCTCCACCTGCT TGCTGCCTCTAGCTTTCCCTGCAACATTCTCATAAACCATCCTCTTGTTGATAAGCATGCTGTCAATAATCAAAACTTGACTGCTCTTGACATCCTTTCC TCATCGGACGATAAATTACAGTTATTGGCATCAAAGATACGCAGGAAGGCTCAGTTAATCAAGGCTGGGAGTAAAACAGGCCAGAGAAACAGAATCTGCA CAGAAGACAATTCTGCAAGAGTAGAGAAGCTTAACAGCTTGGTTTCTGCGCTAAAGAGAGCACAGGAATCCCACCTGGTCGTTGCTACTCTCATAACTAC AGTAAGCTTTGCAGCAGGATTCACCATGCCAGGAGGTTACTTCAGTGATTCGGACAAGCAGGGCGATGATAAGCTAAGGCACTGCAATCTTATCAAGCAA GGGAGCCTTCCAATGGTTCCTCATGGCAGATGCATACGCACTTATGTGCTCCCTCGCTGCAGTTTTGATTCACTTCATGTTGGCTATCCAGAGGAACAAG AGGAAGTACTGGCTTTTGTTCACTGTGGCATCTAA
AA sequence Show only first row Show all	>Lus10013878 pacid=23159498 polypeptide=Lus10013878 locus=Lus10013878.g ID=Lus10013878.BGIv1.0 annot-version=v1.0 MSDTALHEAVRNNHVGPNGRTPLHAATINGDAELTRMILELNSGVSKDVDQQGWTPLHHASHFAHLSIVKQLLESDKSAAYIQDEDEGSASHCSWHGDDT HVEIMEVMISHCPDSCEAVARRGRNALHYAAESYSTKGLKILLSNPFSSAEMINQKDCEGNTPLHLLAASSFPCNILINHPLVDKHAVNNQNLTALDILS SSDDKLQLLASKIRRKAQLIKAGSKTGQRNRICTEDNSARVEKLNSLVSALKRAQESHLVVATLITTVSFAAGFTMPGGYFSDSDKQGDDKLRHCNLIKQ GSLPMVPHGRCIRTYVLPRCSFDSLHVGYPEEQEEVLAFVHCGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03670			ankyrin repeat family protein ...		Lus10013878 [exp]	0	1
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10034048 [exp]	1.0	0.8826
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10006923 [exp]	5.8	0.7008
AT3G56230			BTB/POZ domain-containing prot...		Lus10017414 [exp]	19.6	0.6017
					Lus10023763 [exp]	21.4	0.6924
AT5G42290			transcription activator-relate...		Lus10021820 [exp]	28.2	0.6578
AT1G69210			Uncharacterised protein family...		Lus10014566 [exp]	28.4	0.5939
AT2G30880			Pleckstrin homology (PH) domai...		Lus10027607 [exp]	29.4	0.5779
AT5G17390			Adenine nucleotide alpha hydro...		Lus10007982 [exp]	30.9	0.5843
AT5G04885			Glycosyl hydrolase family prot...		Lus10019385 [exp]	31.8	0.6588
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10030030 [exp]	31.9	0.5812

Compare expression of checked genes

Lus10013878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.