Plant FIBer expression Database

Lus10013879 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17972 119 / 8e-34 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026591
[exp]
298 / 2e-103 AT2G17972 119 / 2e-34 unknown protein
Lus10014382
[exp]
0 / 1 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G115000
[exp]
136 / 3e-40 AT2G17972 140 / 7e-43 unknown protein
PFAM info
Representative CDS sequence
>Lus10013879 pacid=23159501 polypeptide=Lus10013879 locus=Lus10013879.g ID=Lus10013879.BGIv1.0 annot-version=v1.0
ATGGCGTGCTACACGATATCAGGAATCCGCTTGCCTTGTGTTCCTTCAGTCCATCGCAACTCTCAATATCACTCTTCCTTTTTCGACCGCCGGACTTCCT
CCGTCACCACCGTGCTGTCTTTCTCCTCGAAGAAACTCCCGCTCTCTCGTACTCTCCCTGTCTCTCTCCCTCGATTGAACGATTTGATCGTTTTAGCAAC
TAAGGGAGACGATCTTTTTTCTGTTGAACGGTGTAGTCGTAGGATTGGAGAATCATCGCCGGCCCTTTACGAGACACCAGAAAGTTCCACGACAGCTGCT
GGCAACAAAAGGATCCTCGAGAAACAAGGGGAGAATGCAGAGCCTGTAAGGTTCAGGCGCCGCTCTTCTAAAAGGCGTGCTAGGCAGCGAGGAGAAGGAG
GAATCAACGGAGGAGCGGCATCACGAACGACCAAGGATCCGCCAAAGAAATGGGAGGATATGAGCATGGGAGAGAAGGCAATGGAGCTTTACGTCGGGGA
GAAAGGTGCGCTCTTCTGGCTAAACAAATTCGCTTACGCCTCCATTTTCATCGTCATCGGTGGCTGGATTGTATTCCGGTTTGTCGGGCCGGCCTTGAAT
CTCTACCAGCTGGACGCTCCGCCCCTTCCTCCATCTGCCATGTTCAAGGGCGAGGAATGA
AA sequence
>Lus10013879 pacid=23159501 polypeptide=Lus10013879 locus=Lus10013879.g ID=Lus10013879.BGIv1.0 annot-version=v1.0
MACYTISGIRLPCVPSVHRNSQYHSSFFDRRTSSVTTVLSFSSKKLPLSRTLPVSLPRLNDLIVLATKGDDLFSVERCSRRIGESSPALYETPESSTTAA
GNKRILEKQGENAEPVRFRRRSSKRRARQRGEGGINGGAASRTTKDPPKKWEDMSMGEKAMELYVGEKGALFWLNKFAYASIFIVIGGWIVFRFVGPALN
LYQLDAPPLPPSAMFKGEE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G17972 unknown protein Lus10013879
[exp]
0 1
AT3G53700 MEE40 maternal effect embryo arrest ... Lus10006373
[exp]
3.5 0.9201
AT2G47210 MYB myb-like transcription factor ... Lus10034713
[exp]
4.6 0.8981
AT3G10840 alpha/beta-Hydrolases superfam... Lus10028989
[exp]
8.4 0.8846
AT3G55330 PPL1 PsbP-like protein 1 (.1) Lus10030326
[exp]
9.9 0.9083
Lus10005791
[exp]
10.2 0.9107
AT3G55330 PPL1 PsbP-like protein 1 (.1) Lus10003289
[exp]
10.5 0.8896
AT1G09900 Pentatricopeptide repeat (PPR-... Lus10015112
[exp]
11.8 0.8985
AT4G02790 EMB3129 EMBRYO DEFECTIVE 3129, GTP-bin... Lus10006927
[exp]
13.4 0.8760
AT1G66330 senescence-associated family p... Lus10002290
[exp]
14.2 0.8463
AT3G53700 MEE40 maternal effect embryo arrest ... Lus10012328
[exp]
14.4 0.8999

Lus10013879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.