Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15020 488 / 2e-168 unknown protein AT5G64190 145 / 1e-37 unknown protein AT2G40390 124 / 4e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026592 [exp] 952 / 0 AT2G15020 518 / 2e-180 unknown protein Lus10010225 [exp] 105 / 5e-24 AT2G40390 555 / 0.0 unknown protein Lus10009844 [exp] 96 / 1e-20 AT2G40390 517 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G094100 [exp] 538 / 0 AT2G15020 592 / 0.0 unknown protein Potri.010G183100 [exp] 139 / 2e-35 AT2G40390 590 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013880 pacid=23159430 polypeptide=Lus10013880 locus=Lus10013880.g ID=Lus10013880.BGIv1.0 annot-version=v1.0 ATGTTGGACGTTTGGTCTTGGATATCAGAGCTTCCCACCTCCGAGGAATGGCAGCTTGGTTCCGACCCCAACTCGTCAGATGTACTCATCTTCGAGCTTG CTAATTCTCATGTACTCGATCCAACTCGGTCTCTCCACCTCCGAGCTGAACGCAGCACCACTACTACTTCTCCACGACCCAACTCCACTCCTTCCGTGAC TCTATCCGTCTGCTTACGTGGCTTCTCGACCACCACAGTCTGGGTCTCCGACACCTACCCGCTAGACTCCGACCAAACCAACAACAACTTCCTGCTCCCC TTACTCCTCCAGCTCCTCCAAGAGATCATCACCCGGGCCCCCACGTCCTACAACAGCACCTGCCCGCGCTCCCAGTTCCAGAAGCTCCGACCCGAACCGG TCTCCTGGATAATAGACTCCCACTCTCCCGAGTCCTTCTCCAACTTCTTCAACCTCGTCTTCCTCACCCGCCTCTTCTGGTCATGTGCACTCGACGCGCC ATGTGAAGTCGGTTCTTTCTATCTTGACTCTCTCCTGGGCCCTAACATCCACTCCTTGTTAGCCCCACACCACGCGCCTGTCTTGCGGAAGTTCTTGGTC GCGGTGGGATCCGACGTGGAGCTCTCCTTCATGCGCACACTCGGGTACATGTTAGCAAAATGGCTTATCTCTAGAGAGGTCACCGTGGTGGGGCCAGGCT TACGTTCACTCATCGTTCCACAGAATATTGTTACTCCAGCTCAGCAGCAACAGCTAGGATTCAGCTACGCCACGGAGGCTCACGGGTTCTGGATTCTGAA GGGCTACGCGCCTATTCCATCCATGAGGCTTACTCGCTACAGAAGCAATAACGATTTCTTCTTCGTCTCCTCGCCGTTTCTCGAACAGAACGAGTCCGTG TTGAAATACGCGCTGGCTCACAATCAGTTGGAAGCGGTTATTCAGTTGGAATACTCGGTCACATTCCACGAAACCTACATCCAGGTCAGCGCCCGCGTGG ACAACCTCCGATTCCATGTGGCGAAGCTTGGCTTCAATAAAAACAACGACAACGTGGAAGAATACACGGAGGAAAGGCATTTCGTGTCAAGGGTCCGGGC TTGGGTTGGGCCGGAGATTGGTGCTACGTACATAGCGGGCTTGAGTTTGGGCCGGTCGACCCACAACGGAGAGAGCGAAACGACGGAGCAACAGATGTTG ACGAAGGATATTTCGGACAATTTGTCGACCCGAAGAGCGAGGAAGGTGACAAGGATGAGGACGAAAGACTGGAGGTGGGACCAGGACGTGGAAGGGAACG CCGTCGTTTTCGATGCCGTCTTGTATGATAGTACCACGTGTCGTGAGTATTATAGCAGCAACGGGAGTGGGCCGCGGTGGGGCGGAGGAGATGGGCCTAA CAGGCCTTTTACGAAGACGAGAGGGCTGGTATTTGGCGGGGACGAGTACGGGAACGAGGTGGTGTGGAGAGTTGGGAAAGAAATGGAAGGGAGTGTGTTG AAGTGGAGAATTGGAGGGGAAGTTTGGGTGAGTTATTTTCCAATTCAAGTGAAGAGTTCGTATTTTGAGACTAGGTGTGTTGAGTGGTGTGATGAGATTG ATTTGCCTTTGATTCCTGGGAAGTATGTGGATTAG
AA sequence Show only first row Show all	>Lus10013880 pacid=23159430 polypeptide=Lus10013880 locus=Lus10013880.g ID=Lus10013880.BGIv1.0 annot-version=v1.0 MLDVWSWISELPTSEEWQLGSDPNSSDVLIFELANSHVLDPTRSLHLRAERSTTTTSPRPNSTPSVTLSVCLRGFSTTTVWVSDTYPLDSDQTNNNFLLP LLLQLLQEIITRAPTSYNSTCPRSQFQKLRPEPVSWIIDSHSPESFSNFFNLVFLTRLFWSCALDAPCEVGSFYLDSLLGPNIHSLLAPHHAPVLRKFLV AVGSDVELSFMRTLGYMLAKWLISREVTVVGPGLRSLIVPQNIVTPAQQQQLGFSYATEAHGFWILKGYAPIPSMRLTRYRSNNDFFFVSSPFLEQNESV LKYALAHNQLEAVIQLEYSVTFHETYIQVSARVDNLRFHVAKLGFNKNNDNVEEYTEERHFVSRVRAWVGPEIGATYIAGLSLGRSTHNGESETTEQQML TKDISDNLSTRRARKVTRMRTKDWRWDQDVEGNAVVFDAVLYDSTTCREYYSSNGSGPRWGGGDGPNRPFTKTRGLVFGGDEYGNEVVWRVGKEMEGSVL KWRIGGEVWVSYFPIQVKSSYFETRCVEWCDEIDLPLIPGKYVD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15020			unknown protein		Lus10013880 [exp]	0	1
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004786 [exp]	1.4	0.9695
AT3G52740			unknown protein		Lus10020614 [exp]	2.0	0.9628
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10029740 [exp]	4.2	0.9469
AT2G15020			unknown protein		Lus10026592 [exp]	4.5	0.9300
AT1G76110	ARID		HMG (high mobility group) box ...		Lus10021228 [exp]	4.8	0.9038
AT3G18430			Calcium-binding EF-hand family...		Lus10042708 [exp]	5.5	0.9436
AT1G79510			Uncharacterized conserved prot...		Lus10009597 [exp]	5.9	0.9445
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	6.0	0.9454
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10003323 [exp]	6.7	0.9317
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	7.5	0.9423

Compare expression of checked genes

Lus10013880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.