Plant FIBer expression Database

Lus10013881 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026593
[exp]
179 / 7e-58 ND /
Lus10020975
[exp]
126 / 3e-37 AT5G13920 42 / 5e-05 GRF zinc finger / Zinc knuckle protein (.1)
Lus10025368
[exp]
125 / 1e-36 AT3G42860 44 / 1e-05 zinc knuckle (CCHC-type) family protein (.1)
Lus10011629
[exp]
39 / 0.0007 ND 39 / 6e-04
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G094001
[exp]
106 / 4e-29 AT3G42860 44 / 3e-05 zinc knuckle (CCHC-type) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0167 Zn_Beta_Ribbon PF06839 zf-GRF GRF zinc finger
Representative CDS sequence
>Lus10013881 pacid=23159450 polypeptide=Lus10013881 locus=Lus10013881.g ID=Lus10013881.BGIv1.0 annot-version=v1.0
ATGAAAGGGCATATCTTTCTAGAGAGAGCATGGCTGACTGATGTATCTGATGCAAGTTCATGTGAAGGTTCGGAATCTGATTATGACGATTACGATGATT
CCGTACCAGAATGCTTCTGTGGCTTCCCTGCGAAACTACGCATGTCTCAAACCGCCAAGAATCCACTCCTGTTATTCTACAACTGTCGAGGTTTCGACGA
CCAGTGCGGCTTCTTCCAGTGGTGTGATGAGCCAACTCAAACAGGAGTTAAGCATTTCGACGAGCTAACCCGCTATCTCCACGAGTGCATTGCAATTCAG
CAGAAGTACGATAACCAAGTGCAGGAGCATGCGAACAAGAGGAGAAAATGGGAGGCTGAAAAAGAGTTTCTTGTGTCTGAACTAGACAAAGTTCGAGCAG
AGCCGCATGAGTTCAAGAAGAGGGCTAAACTTGTCGGGGAGTCAGATCTTATGTCGCCAGTGGATTCGATGTCGAGCAATGACAAGGATGAGAGCGATGG
TGATGACGATGATGATGATGTGAAGGATATTCATCCCATATAA
AA sequence
>Lus10013881 pacid=23159450 polypeptide=Lus10013881 locus=Lus10013881.g ID=Lus10013881.BGIv1.0 annot-version=v1.0
MKGHIFLERAWLTDVSDASSCEGSESDYDDYDDSVPECFCGFPAKLRMSQTAKNPLLLFYNCRGFDDQCGFFQWCDEPTQTGVKHFDELTRYLHECIAIQ
QKYDNQVQEHANKRRKWEAEKEFLVSELDKVRAEPHEFKKRAKLVGESDLMSPVDSMSSNDKDESDGDDDDDDVKDIHPI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10013881
[exp]
0 1
AT1G26730 EXS (ERD1/XPR1/SYG1) family pr... Lus10004284
[exp]
2.2 0.9599
Lus10030782
[exp]
2.4 0.9474
AT3G07120 RING/U-box superfamily protein... Lus10038180
[exp]
3.3 0.9023
AT1G22400 ATUGT85A1, UGT8... ARABIDOPSIS THALIANA UDP-GLUCO... Lus10013920
[exp]
4.0 0.9563
AT2G16730 BGAL13 beta-galactosidase 13, glycosy... Lus10014126
[exp]
4.9 0.9563
AT5G45670 GDSL-like Lipase/Acylhydrolase... Lus10015241
[exp]
5.7 0.9563
AT5G20260 Exostosin family protein (.1) Lus10039980
[exp]
6.3 0.9563
AT1G22380 ATUGT85A3 UDP-glucosyl transferase 85A3 ... Lus10013919
[exp]
7.5 0.9430
AT1G66350 GRAS RGL1 RGA-like 1 (.1) Lus10041128
[exp]
7.9 0.9205
AT1G18010 Major facilitator superfamily ... Lus10009413
[exp]
8.0 0.9300

Lus10013881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.