Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34260 149 / 1e-40 AXY8, FUC95A ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026594 [exp] 279 / 9e-88 AT4G34260 1100 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10013884 [exp] 172 / 1e-48 AT4G34260 1023 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10026595 [exp] 171 / 2e-48 AT4G34260 570 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10029689 [exp] 165 / 3e-46 AT4G34260 1039 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10020979 [exp] 150 / 4e-41 AT4G34260 995 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299000 [exp] 194 / 2e-56 AT4G34260 1104 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093900 [exp] 191 / 1e-55 AT4G34260 1133 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093500 [exp] 165 / 3e-46 AT4G34260 1030 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.001G298900 [exp] 161 / 1e-44 AT4G34260 991 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013883 pacid=23159476 polypeptide=Lus10013883 locus=Lus10013883.g ID=Lus10013883.BGIv1.0 annot-version=v1.0 ATGGAGGACGACGGTTGGGTCCACGTCCGTCGCCCCGCCGAGAAAGACTACTGGAGTCCAACTTCCGTCCAGGTGGACACCGACGGAGAGCCTTCTCCTT CTTCTTCCCAGCCGTTGAAGTTGATCTTCACCGCTCCGTCCAAGTACTGGACCGACGCCATTCCCATCGGCAATGGCCGCCTCGAGGATACACTCTGGAC AGGTGTTCCCGGAAATTACACTGATCCAGATGATCCAGCGGCTCTTTCCAAGGTCAGAAAGCTTGTTGACGATGGTCAATTCACTGAAGCTACTAAAGAA GCCGTCAAATTGTCCGATCGTCCTTCTGAGGTTTACCAATTGCTTGGGGATATGATACTTGAATTTGACACTTTGCACCTCAAATATGACGAGCGGACTT ATCACAGAGAACTGGATTTGGATACTGCTACTGCAACAGTCAAATATTCCAATAATTTGCTCTTCCCTACATTGCCATGTCTTTCCCTGTGCAGATTCTC GGCAGCAATAGCCGAAATGCTAGTCCAGAGCACCGTGAAGGACCTCTATTTACTCCCCGCTCTTCCTCGCGACAAGTGGGCAAATGGATGCGTGAAAGGA CTCAAAGCGCGTGGCGGGGTAACGGTAAATGTATGCTGGAAAGAAGGCGACCTTCACGAAGTCGGTCTTTGGTCAACAGGTCGGAACTCTATCCAGCAGC GCTTGCATTACAGAGGAAGGACTGTGAACGCAAGCCTATCGTCCGGTAAAGCATACACTTTCAACATGGAGCTCAGGTGTATAAGAACCTACTCCCTCTC ACTACTAGCTTCTTGTTGA
AA sequence Show only first row Show all	>Lus10013883 pacid=23159476 polypeptide=Lus10013883 locus=Lus10013883.g ID=Lus10013883.BGIv1.0 annot-version=v1.0 MEDDGWVHVRRPAEKDYWSPTSVQVDTDGEPSPSSSQPLKLIFTAPSKYWTDAIPIGNGRLEDTLWTGVPGNYTDPDDPAALSKVRKLVDDGQFTEATKE AVKLSDRPSEVYQLLGDMILEFDTLHLKYDERTYHRELDLDTATATVKYSNNLLFPTLPCLSLCRFSAAIAEMLVQSTVKDLYLLPALPRDKWANGCVKG LKARGGVTVNVCWKEGDLHEVGLWSTGRNSIQQRLHYRGRTVNASLSSGKAYTFNMELRCIRTYSLSLLASC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013883 [exp]	0	1
AT5G08110			nucleic acid binding;ATP-depen...		Lus10013505 [exp]	7.7	0.7494
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10034967 [exp]	10.4	0.7431
AT4G36945			PLC-like phosphodiesterases su...		Lus10019339 [exp]	13.2	0.7371
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10021039 [exp]	16.7	0.7303
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10033052 [exp]	17.4	0.7338
AT5G20690			Leucine-rich repeat protein ki...		Lus10005175 [exp]	18.7	0.6864
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10009926 [exp]	19.0	0.7188
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029690 [exp]	21.2	0.7157
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	22.4	0.7099
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	23.8	0.7099

Compare expression of checked genes

Lus10013883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.