Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34260 1005 / 0 AXY8, FUC95A ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026594 [exp] 1164 / 0 AT4G34260 1100 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10029689 [exp] 1160 / 0 AT4G34260 1039 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10020979 [exp] 958 / 0 AT4G34260 995 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10026595 [exp] 839 / 0 AT4G34260 570 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10013883 [exp] 170 / 3e-47 AT4G34260 146 / 1e-39 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G093900 [exp] 1126 / 0 AT4G34260 1133 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.001G299000 [exp] 1125 / 0 AT4G34260 1104 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093500 [exp] 992 / 0 AT4G34260 1030 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.001G298900 [exp] 989 / 0 AT4G34260 991 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093600 [exp] 51 / 4e-08 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013884 pacid=23159463 polypeptide=Lus10013884 locus=Lus10013884.g ID=Lus10013884.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCTTCTCTCTGCAGCCACCATCACCATCACCGCCCTCGTTTATCTTCTTTCCTCTTCCTCTTTTCCTCCCTTTCCCTCTTCCTCATTTCCT CCCTTTCTTTTCTCCTCTTAACCGCCGCTGCAGATTCTTCTTCCTCCTCCTCCTCCTCCTCCTCAGGCGATGGCGGTGACCCTCTGAAGCTGACATTCAC CGCCCCTGCAAAATACTGGACCGACGCTATCCCCATTGGCAATGGCCGCCTCGGCGCCGTTGTATGGGGCGGCGTCGTTAACGAAACTCTCCAGCTCAAC GATGATACGTTGTGGACCGGAGTTCCCGGGACCTACACAGATTCCAATGCACCGGCGGCTCTCGTGGTGGTCAGAAAGCTCGTCAGTTCCGGCCAATACG CTGAAGCTTCCGCCGAGGCTATTAAACTCTCAGGAACTCCCTCTCAGATTTACCAATTGCTGGGAGACATAGTGCTTGAATTCGACGGTTCACACAAGAA CTACGACCCCAAAACCTACCACAGAGAGCTGGATTTGGACACCGCTACAGCAACCGTCAAATACACAGTCGGGGGAATCGAATACACGAGGGAGCATTTC GCTTCCAATCCGAATCAAGCAATCGTGACCAAGATTTCAGCGAGCAAGCCTGGGTTTGTATCCTTTACTGTTCATATGGACAGTAAGATGAATCACACTT CTTCACACGTAGAAGGGAAGCACCAGATTGTATTGACAGGGAGTTGTAGAGGGATTCCGAAGGGAATTCAATTCACCGCAATGCTGGATCTGCAGATCGG AGGAGGCAATGGATCAGCAGTTATCCGAGAAGGTGGGAAGTTGAAGGTTGTTGGTGCGGATTGGGCGGTTCTGGTTCTTGTGGCTTCATCTTCATTTGAT GGACCGTTCGTTAAACCGGTTGATTCGAAGAAGAATCCGACTTCGGATTGCGAAAAGGGGCTGAACTCGTTAGTTGGTGTGGCGTATGCTGATCTGAGAG CTCGGCATTTGGAGGATTATCAGAGTTTGTTCCACCGCGTTTCACTGCAGCTTTCTTCCGGAGGTTCATCAAGCAGTGTGTTGTCAACTGCGGAGAGAGT GAAGTCGTTTAAAACTGATGAAGATCCGTCTTTGGTGGCGTTGATGTTCCAGTACGGTCGGTATTTGTTGATTTCGTGTTCCAGGCCTGGAACTCAGGTT GCGAATCTGCAGGGGATTTGGAATAAGGATATCAACCCGCCATGGGATGGTGCTCAACATTTGAACATCAACCTGCAAATGAACTATTGGCCAGCACTGT CCTGCAATCTTAAGGAGTGTCAAGAGCCATTGTTTGACTACATGTCTTCCCTCTCAGTCAATGGGAAGAAGACCGCTACGGTGAACTATGGAGCAAATGG CTGGGTTGCGCATCAGGTGAGCGACGTATGGGCGAAAACGTCTCCTGATTTTGGAGATGCGATATGGGCTATGTATCCGCTGGGTGGATCTTGGCTTTGT ACACACTTGTGGGAGCATTATAGTTATACAATGGACAAAGACTTCCTTGGGAAAAAGGCTTACCCTTTGTTGGAAGGATGTGCTGAGTTTCTACTAGACT GGTTGGTCGAAGGACCTGGAGGATATCTCGAAACCAATCCGTCAACTTCCCCGGAACATAAATTCATCGCTCCAGACGGGAAGCAAGCCAGTGTTAGCAA CTCAACTACCATGGACATGTCAATCATAAGACAAGTCTTCTCAGACATTGTCTCTGCTGCTGAAGTTTTAGGAAGAAAGGGTGATGAGCTCATTCAGAAA GTTAGCCACGCCACATCTCGCCTTCCGCCCACTAAAATCGCGAAGCAGGGTACTGTCATGGAATGGGCGTTTGATTTCAAAGACCCGGAGCCTCAGCACA GACACCTGTCCCATCTCTTTGGGTTGTACCCTGGCCATACCATTACTCCACGGGATACTCCAGAGCTCTGCAATGCTTCAGAAAGCACTCTGATCAAGAG AGGTGTTGAAGGCCCAGGATGGTCGACTGTGTGGAAAGCTGCATTATGGGCAAGGCTACACAAGAGTGACAAGGCTTATCAGATGGTCAAGCATTTGTTT AACCTGGTGGATCCTGCACATGAAGGAGACTACGAAGGAGGAGTTTTTAGTAACTTGTTTACTGCTCACCCGCCGTTCCAGATCGATGCGAACTTGGGGT TCTCCGCAGCCATAGCGGAGATGTTAGTACAGGGGACAGGAACTGATCTCTTCCTACTCCCTGCTCATCCAGGCGGTAAATGGCCAGATGGGTGCGCGAA GGGGTTAAGAGCGAGAGGAGGGGTGGCGGTCAACCTGTGCTGGAAAAACGGCGAGCTTGAAGAAGCTGTCCTTTGGTCGACACAAGGAAACTCGATCCAA CAGCTGCATTATGGAGAAAAGATGGTGAACGCAAGTATACTGTCATGTAATATGTACACATTCAATAGGGAGCTAACACTTACTAGAACAGAATCACTTT CGCAAGTAGATTCTTCTTGCTGA
AA sequence Show only first row Show all	>Lus10013884 pacid=23159463 polypeptide=Lus10013884 locus=Lus10013884.g ID=Lus10013884.BGIv1.0 annot-version=v1.0 MASPSLCSHHHHHRPRLSSFLFLFSSLSLFLISSLSFLLLTAAADSSSSSSSSSSGDGGDPLKLTFTAPAKYWTDAIPIGNGRLGAVVWGGVVNETLQLN DDTLWTGVPGTYTDSNAPAALVVVRKLVSSGQYAEASAEAIKLSGTPSQIYQLLGDIVLEFDGSHKNYDPKTYHRELDLDTATATVKYTVGGIEYTREHF ASNPNQAIVTKISASKPGFVSFTVHMDSKMNHTSSHVEGKHQIVLTGSCRGIPKGIQFTAMLDLQIGGGNGSAVIREGGKLKVVGADWAVLVLVASSSFD GPFVKPVDSKKNPTSDCEKGLNSLVGVAYADLRARHLEDYQSLFHRVSLQLSSGGSSSSVLSTAERVKSFKTDEDPSLVALMFQYGRYLLISCSRPGTQV ANLQGIWNKDINPPWDGAQHLNINLQMNYWPALSCNLKECQEPLFDYMSSLSVNGKKTATVNYGANGWVAHQVSDVWAKTSPDFGDAIWAMYPLGGSWLC THLWEHYSYTMDKDFLGKKAYPLLEGCAEFLLDWLVEGPGGYLETNPSTSPEHKFIAPDGKQASVSNSTTMDMSIIRQVFSDIVSAAEVLGRKGDELIQK VSHATSRLPPTKIAKQGTVMEWAFDFKDPEPQHRHLSHLFGLYPGHTITPRDTPELCNASESTLIKRGVEGPGWSTVWKAALWARLHKSDKAYQMVKHLF NLVDPAHEGDYEGGVFSNLFTAHPPFQIDANLGFSAAIAEMLVQGTGTDLFLLPAHPGGKWPDGCAKGLRARGGVAVNLCWKNGELEEAVLWSTQGNSIQ QLHYGEKMVNASILSCNMYTFNRELTLTRTESLSQVDSSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013884 [exp]	0	1
AT4G36945			PLC-like phosphodiesterases su...		Lus10019339 [exp]	2.8	0.9213
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	5.3	0.9057
AT5G04970			Plant invertase/pectin methyle...		Lus10028882 [exp]	5.5	0.8793
AT3G10720			Plant invertase/pectin methyle...		Lus10008937 [exp]	6.0	0.9014
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	6.2	0.9028
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021046 [exp]	6.8	0.7609
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	8.7	0.8975
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028883 [exp]	9.5	0.8373
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10011476 [exp]	9.7	0.8056
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10021165 [exp]	9.9	0.8696

Compare expression of checked genes

Lus10013884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.