Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15000 81 / 1e-20 unknown protein AT4G34265 64 / 5e-14 unknown protein AT4G17310 49 / 6e-08 unknown protein AT5G47455 44 / 3e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026596 [exp] 100 / 7e-28 AT2G15000 123 / 6e-38 unknown protein Lus10025365 [exp] 86 / 2e-22 AT2G15000 126 / 2e-39 unknown protein Lus10020971 [exp] 83 / 4e-21 AT2G15000 121 / 4e-37 unknown protein Lus10028954 [exp] 42 / 1e-05 AT4G17310 100 / 5e-29 unknown protein Lus10007477 [exp] 41 / 5e-05 AT4G17310 95 / 6e-27 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G298800 [exp] 78 / 3e-19 AT2G15000 78 / 4e-20 unknown protein Potri.009G093400 [exp] 72 / 4e-17 AT2G15000 73 / 4e-18 unknown protein Potri.017G068600 [exp] 49 / 4e-08 AT4G17310 94 / 2e-26 unknown protein Potri.001G333800 [exp] 42 / 1e-05 AT5G47455 54 / 1e-10 unknown protein Potri.006G237800 [exp] 39 / 0.0002 AT5G11630 99 / 8e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013885 pacid=23159439 polypeptide=Lus10013885 locus=Lus10013885.g ID=Lus10013885.BGIv1.0 annot-version=v1.0 ATGGCTTGGCGCAGTGGAGCTTCTTCCTTTTCCCGCTCCTTCATTTCTTCCGCCCGGTCATCCTCTACGCGCTCCTCTTCAGCTCCGCTTCCCCGCCTCC GTCCACCATCCACCTCCCCCCCTCGCATCCAGTCGCGGCGAGTCTCCTTCTCTCCTTCCAGGTATCGCTTCGTCACCGTGCCAGCTTCGATCCGATTGAT ATTAGGGTCTAGTAATGAATCTGAATTACGTAGCTTCTGTACTGGTTTTCTCGAAGAACACTATGATCCAATGTTGAAATCTGACATTGATTTCAGTTTA ATAAGTAACCGCGATACCAGCTTACTGTGGAACTTGGGAGAGCTAGGATGCGTGCAGTCGTTGTTGCCTCTGCACAGTGTGGTTGCCAATAGCCACCTCA CTTCTCATATCAGTGCTAACCTGCGGGCTTTCTGCGAGCTGCCTCATGGTACCTTCTGCCGCACTTGTCAGGATCGCTAG
AA sequence Show only first row Show all	>Lus10013885 pacid=23159439 polypeptide=Lus10013885 locus=Lus10013885.g ID=Lus10013885.BGIv1.0 annot-version=v1.0 MAWRSGASSFSRSFISSARSSSTRSSSAPLPRLRPPSTSPPRIQSRRVSFSPSRYRFVTVPASIRLILGSSNESELRSFCTGFLEEHYDPMLKSDIDFSL ISNRDTSLLWNLGELGCVQSLLPLHSVVANSHLTSHISANLRAFCELPHGTFCRTCQDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15000			unknown protein		Lus10013885 [exp]	0	1
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10026477 [exp]	3.2	0.9321
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10000542 [exp]	11.5	0.9008
AT5G55130		SIR1, CNX5	SIRTINOL RESISTANT 1, "co-fact...		Lus10022510 [exp]	12.1	0.9198
AT1G66250			O-Glycosyl hydrolases family 1...		Lus10004044 [exp]	12.3	0.9056
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	21.4	0.9154
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	22.9	0.9077
AT1G77030			hydrolases, acting on acid anh...		Lus10018941 [exp]	23.1	0.9076
AT4G24710			P-loop containing nucleoside t...		Lus10043321 [exp]	23.3	0.8971
AT2G40510			Ribosomal protein S26e family ...		Lus10034223 [exp]	26.3	0.9081
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10027654 [exp]	26.7	0.8787

Compare expression of checked genes

Lus10013885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.