Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43080 253 / 7e-82 CYCA3;1 Cyclin A3;1 (.1) AT1G47230 251 / 1e-80 CYCA3;4 CYCLIN A3;4 (.1.2) AT1G47210 242 / 3e-77 CYCA3;2 cyclin-dependent protein kinase 3;2 (.1.2) AT1G47220 224 / 8e-71 CYCA3;3 Cyclin A3;3 (.1) AT1G44110 214 / 1e-65 CYCA1;1 Cyclin A1;1 (.1) AT5G11300 209 / 8e-64 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) AT1G77390 207 / 6e-63 TAM, DYP, CYCA1;2 TARDY ASYNCHRONOUS MEIOSIS, CYCLIN A1;2 (.1) AT5G25380 197 / 6e-59 CYCA2;1 cyclin a2;1 (.1) AT1G80370 193 / 2e-57 CYCA2;4 Cyclin A2;4 (.1) AT1G15570 188 / 1e-55 CYCA2;3 CYCLIN A2;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026598 [exp] 347 / 3e-120 AT5G43080 243 / 9e-80 Cyclin A3;1 (.1) Lus10024822 [exp] 260 / 1e-83 AT1G47230 452 / 5e-159 CYCLIN A3;4 (.1.2) Lus10018715 [exp] 258 / 7e-83 AT1G47230 449 / 6e-158 CYCLIN A3;4 (.1.2) Lus10028544 [exp] 236 / 3e-74 AT1G44110 476 / 4e-167 Cyclin A1;1 (.1) Lus10029700 [exp] 234 / 3e-73 AT1G44110 544 / 0.0 Cyclin A1;1 (.1) Lus10042739 [exp] 236 / 8e-73 AT1G44110 508 / 1e-177 Cyclin A1;1 (.1) Lus10014199 [exp] 217 / 3e-67 AT1G44110 451 / 2e-157 Cyclin A1;1 (.1) Lus10008103 [exp] 209 / 3e-63 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Lus10036080 [exp] 125 / 4e-32 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G093100 [exp] 295 / 2e-97 AT5G43080 288 / 9e-95 Cyclin A3;1 (.1) Potri.002G121500 [exp] 269 / 6e-88 AT1G47230 472 / 1e-167 CYCLIN A3;4 (.1.2) Potri.014G021100 [exp] 264 / 8e-86 AT1G47230 484 / 2e-172 CYCLIN A3;4 (.1.2) Potri.002G080000 [exp] 225 / 4e-69 AT1G44110 593 / 0.0 Cyclin A1;1 (.1) Potri.005G181400 [exp] 218 / 2e-66 AT1G44110 589 / 0.0 Cyclin A1;1 (.1) Potri.003G058200 [exp] 215 / 1e-65 AT1G80370 494 / 9e-173 Cyclin A2;4 (.1) Potri.001G177100 [exp] 213 / 2e-64 AT1G80370 483 / 2e-168 Cyclin A2;4 (.1) Potri.006G247200 [exp] 202 / 1e-60 AT5G11300 494 / 3e-173 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.018G034100 [exp] 196 / 5e-58 AT5G11300 498 / 1e-174 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.016G033000 [exp] 136 / 5e-36 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013886 pacid=23159510 polypeptide=Lus10013886 locus=Lus10013886.g ID=Lus10013886.BGIv1.0 annot-version=v1.0 ATGAACTCGTCTTCGCAGTTTGATCCTCTGCCACTGACCAAGAAGCGAGTCCCGCTCGGTGAACTCACCAACATCATTGCTCACCCGTGCGATAAAAAGC CCAAGCTTTCGCACAACGAGAACGCCGCTCCTCCTCCTCCTCCTCTTCTTCCGCCGCCATTTGATGTTCATCAGACGGACATTGATGTTCACGGCTTGAA TCCAAATGATCCGATAGAGATCTCCGGTAGTAGCGTTGATTCGACTTCGGGATTGGTGACCAAGAAGTGCAGTGGCTCGTCTTTCATATACGATCATCTC CGGTCACTGGAGGTAGAGGACAGTAGGAGGCCCCTTGCGAATTACATGGAAACAGTTCAGAAAAATCTGCTAGTGAGCATGCGAACAGTTCTGGTTGACT GGCTTGTGGAAGTTGCTGAGGAGTATAAGCTCGTCGCCGATACGCTATTTCTCTCGATATCTTATATTGACAGATACTTGTCCTCTAGATGTATCGACAA AGACAAGCTCCAGCTTCTTGGTGTCTCTTGCCTGCTTATTGCTTCGAAGTACGAAGAGATAAATCCTCGCCATGCTGACGATTTTTGCCACATTACTGAT AACACTTACACCAAAGAGGAGCTACTGGAGATGGAGGCAGATGTGCTAAAATTCTTGAACTATGAAATGAGTAATCCCACTGCCAAAAACTTCCTCAGTT GTATGTGTGCTCACAATTTCCAGGATCCCAATAAGCATCTTGAGTTCTTAAGTAGTTACCTTTGTGAGCTAAGCTTGTTGGAGTACGGGTGTGTTCGCTT CTTGCCATCGATGATTGCTGCATCGTCCGTTTTCTTGGCAAGATTCATAATCTCCCCACACCAGCAACCTTGGAGCACATCATTGCAGCTAAAATCTGGT TATAGTCCAGCTGACTTGAAGGATTGCGTTTTATCCATTCATGGCTTCGCGATAAACAAAAAAAGAAGCGACTTCCGAGGCGTTAGAGAGAAGTTCGAGA AGCCCAAGGTACATCCCTCTAGTTCCTCTCCTCTTTTCCACTGGGTCCTAATTGTGATCACCCACATTGTTTTACAAGGCAAATCACTATGA
AA sequence Show only first row Show all	>Lus10013886 pacid=23159510 polypeptide=Lus10013886 locus=Lus10013886.g ID=Lus10013886.BGIv1.0 annot-version=v1.0 MNSSSQFDPLPLTKKRVPLGELTNIIAHPCDKKPKLSHNENAAPPPPPLLPPPFDVHQTDIDVHGLNPNDPIEISGSSVDSTSGLVTKKCSGSSFIYDHL RSLEVEDSRRPLANYMETVQKNLLVSMRTVLVDWLVEVAEEYKLVADTLFLSISYIDRYLSSRCIDKDKLQLLGVSCLLIASKYEEINPRHADDFCHITD NTYTKEELLEMEADVLKFLNYEMSNPTAKNFLSCMCAHNFQDPNKHLEFLSSYLCELSLLEYGCVRFLPSMIAASSVFLARFIISPHQQPWSTSLQLKSG YSPADLKDCVLSIHGFAINKKRSDFRGVREKFEKPKVHPSSSSPLFHWVLIVITHIVLQGKSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10013886 [exp]	0	1
AT5G14020			Endosomal targeting BRO1-like ...		Lus10041527 [exp]	5.2	0.8769
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10001370 [exp]	6.6	0.8724
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	6.8	0.8920
AT1G24160			unknown protein		Lus10002952 [exp]	8.7	0.8445
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10026110 [exp]	8.8	0.7983
AT3G24450			Heavy metal transport/detoxifi...		Lus10017730 [exp]	14.2	0.8882
AT1G08590			Leucine-rich receptor-like pro...		Lus10000814 [exp]	15.2	0.8770
AT2G38870			Serine protease inhibitor, pot...		Lus10024370 [exp]	16.6	0.7571
AT5G15140			Galactose mutarotase-like supe...		Lus10005251 [exp]	17.1	0.8838
AT4G09600		GASA3	GAST1 protein homolog 3 (.1)		Lus10014262 [exp]	17.7	0.8828

Compare expression of checked genes

Lus10013886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.