Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14960 949 / 0 GH3.1 Auxin-responsive GH3 family protein (.1) AT4G37390 936 / 0 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT2G23170 924 / 0 GH3.3 Auxin-responsive GH3 family protein (.1) AT1G59500 875 / 0 GH3.4 Auxin-responsive GH3 family protein (.1) AT4G27260 798 / 0 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT5G54510 794 / 0 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT1G28130 671 / 0 GH3.17 Auxin-responsive GH3 family protein (.1.2) AT2G47750 602 / 0 GH3.9 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) AT1G23160 550 / 0 Auxin-responsive GH3 family protein (.1) AT5G13370 550 / 0 Auxin-responsive GH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026600 [exp] 1238 / 0 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10010391 [exp] 1000 / 0 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10014869 [exp] 941 / 0 AT4G37390 858 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10003598 [exp] 762 / 0 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10014804 [exp] 758 / 0 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 704 / 0 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10039723 [exp] 686 / 0 AT5G54510 855 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10005151 [exp] 417 / 3e-139 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10003039 [exp] 410 / 2e-136 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050300 [exp] 984 / 0 AT2G14960 959 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G298300 [exp] 980 / 0 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.009G092900 [exp] 974 / 0 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.011G129700 [exp] 781 / 0 AT5G54510 1088 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.001G410400 [exp] 777 / 0 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.013G151100 [exp] 776 / 0 AT5G54510 1014 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.002G206400 [exp] 647 / 0 AT2G47750 865 / 0.0 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) Potri.001G069000 [exp] 645 / 0 AT1G28130 901 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.003G161300 [exp] 633 / 0 AT1G28130 910 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.014G095500 [exp] 412 / 2e-137 AT2G46370 790 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF03321 [flax] [poplar] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Lus10013887 pacid=23159495 polypeptide=Lus10013887 locus=Lus10013887.g ID=Lus10013887.BGIv1.0 annot-version=v1.0 ATGGCAATCGATTCTTCTCTCCCAAACGCCCTTGGCCCTCCGGCATGCCAAAAGGACGCAAAGGCCCTCCAATTCATCGAGCACATGACCAAAAACCCTG ACGCCTCCCAAGGCCGAGTCATCGGCGAAATACTCAGGCGGAACGCCGACACTGAGTATCTCCGTAAGTTCAACCTCAACGGCGCAACCGACAGGGAAAC TTTCAAATCCAAAGTCCCCGTCGTCACCTACGAAGATCTCTTGCCGGAGATTCAGCGCATCGCCAACGGCGACCGCTCCCCCATCCTCTCCTCCCACCCA ATCTCCGAATTCCTCACAAGCTCGGGGACTTCAGCCGGAGAAAGGAAACTGATGCCGGCGATCCAGGAGGATCTGGACCGTCGCCAGCTGTTATACAGCT TGCTGACGCCGGTGATGAACCTCTACGTTCCGGGGCTAGACAAAGGGAAGGCTCTCTACTTCTACTTCATCAAGGCCGAATCAAAAACACCGGGCGGGTT ACTAGCCAGACCGGTTCTAACCAGCTACTACAAATCGGACCACTTCAAGAACCGACCGTACGACCCATACAACGTCATCACAAGTCCAACCGAGGCCATC CTCTGCGTTGACTCGTTCCAGAGCATGTACACCCAAATGCTCTGCGGCCTAATCATGCGCGAACAAGTCCTCCGATTCGGCGCCGTTTTCGCCTCTGGGC TTCTGAAAGCCATCCGATTCCTCCAGCTCAACTGGGAGGAGCTGGCCCACGACATCCGAACCGGAACCTTGAACAAAAAAGTCAACGATCCGTCCATAAG GGAGTGCATGAAGAAGACTTTGACTCCCAACCCAAGCCTCGCTGACTTTATAATCTCCGAGTGCTCTGACGCAAACTGGGAACGGATCGTACGGAGGATA TGGCCTAATACGAAGTACGTCGACGTGATTGTCACCGGAGCGATGGCGCAGTACATTCCGACTCTGGAGTATTACACCGGCGGACTTCCGATGGCTTGCA CGATGTACGCATCGTCGGAGAGTTACTTCGGACTGAATCTAAACCCCATGTGCAAGCCGTCTGAAGTTTCCTACACGCTGATGCCTAACATGTGCTACTA CGAGTTTCTGCCACACTCGGAGGCAGAGGAAAAAGAGGAGGAATTGCAGCCCAGTCAACTAGTTGACCTGGCTGACGTGGAGGTTGGAAAGGAGTACGAG CTGATCATAACTACGTACGCGGGTCTATGCCGGTACCGGGTCGGGGACATACTCCGGGTCACCGGGTTCCACAACGCGGCCCCGCAATTCCGGTTCATAA GGAGGAAAAACGTGCTGCTGAGTATCGACTCGGATAAAACCGACGAGTCGGAGCTGCAGCGGGCGATCGAGGAAGCGTCGAGTTTTCTGAAGGAGTACAA GACGAGCGTGGTGGAGTACACGAGCTACGCGGATACAAAAGGGATTCCGGGCCATTACGTGATATTTTGGGAGCTGCTGGTGAAGGACGCGCGCCACGCG CCAACAAAGGAGGTGATGGAGAAGTGTTGCTTGGCGATGGAGGAGGCGTTGAATTCGGTTTACAGGCAAGGGAGGGTGATGGAGTCGATCGGGGCGCTGG AGATCAGGGTGGTTCAAAACGGTACGTTTGAGGAGCTTATGGATTACGCGATCTCGAGAGGCGCGTCGATTAATCAGTACAAAGTGCCGAGGTGCGTGAG TTACACGCCCATAATGGAGCTGCTGGATGGGAGAGTTGTGTCCAGACATTTTAGCCCGTCGGTTCCTCATTGGTCGCCGGAACGACGTCGTTAG
AA sequence Show only first row Show all	>Lus10013887 pacid=23159495 polypeptide=Lus10013887 locus=Lus10013887.g ID=Lus10013887.BGIv1.0 annot-version=v1.0 MAIDSSLPNALGPPACQKDAKALQFIEHMTKNPDASQGRVIGEILRRNADTEYLRKFNLNGATDRETFKSKVPVVTYEDLLPEIQRIANGDRSPILSSHP ISEFLTSSGTSAGERKLMPAIQEDLDRRQLLYSLLTPVMNLYVPGLDKGKALYFYFIKAESKTPGGLLARPVLTSYYKSDHFKNRPYDPYNVITSPTEAI LCVDSFQSMYTQMLCGLIMREQVLRFGAVFASGLLKAIRFLQLNWEELAHDIRTGTLNKKVNDPSIRECMKKTLTPNPSLADFIISECSDANWERIVRRI WPNTKYVDVIVTGAMAQYIPTLEYYTGGLPMACTMYASSESYFGLNLNPMCKPSEVSYTLMPNMCYYEFLPHSEAEEKEEELQPSQLVDLADVEVGKEYE LIITTYAGLCRYRVGDILRVTGFHNAAPQFRFIRRKNVLLSIDSDKTDESELQRAIEEASSFLKEYKTSVVEYTSYADTKGIPGHYVIFWELLVKDARHA PTKEVMEKCCLAMEEALNSVYRQGRVMESIGALEIRVVQNGTFEELMDYAISRGASINQYKVPRCVSYTPIMELLDGRVVSRHFSPSVPHWSPERRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Lus10013887 [exp]	0	1
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10036800 [exp]	1.7	0.9674
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10037818 [exp]	7.5	0.9497
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10004870 [exp]	12.3	0.9439
AT4G25030			unknown protein		Lus10036514 [exp]	12.7	0.9402
					Lus10011653 [exp]	12.7	0.9460
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004858 [exp]	15.6	0.9397
AT1G06840			Leucine-rich repeat protein ki...		Lus10019114 [exp]	16.9	0.9427
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10000144 [exp]	19.4	0.9379
					Lus10022008 [exp]	22.6	0.9398
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10037131 [exp]	24.9	0.9156

Compare expression of checked genes

Lus10013887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.