Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14910 367 / 1e-124 unknown protein AT5G14970 145 / 3e-39 unknown protein AT1G63610 71 / 4e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026601 [exp] 597 / 0 AT2G14910 396 / 9e-137 unknown protein Lus10032180 [exp] 135 / 1e-35 AT5G14970 327 / 4e-111 unknown protein Lus10014506 [exp] 136 / 2e-35 AT5G14970 329 / 5e-111 unknown protein Lus10016008 [exp] 73 / 7e-14 AT1G63610 409 / 1e-143 unknown protein Lus10030753 [exp] 69 / 2e-12 AT1G63610 397 / 6e-139 unknown protein Lus10013233 [exp] 69 / 2e-12 AT1G63610 389 / 1e-135 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G298200 [exp] 419 / 1e-144 AT2G14910 419 / 1e-145 unknown protein Potri.009G092800 [exp] 394 / 7e-135 AT2G14910 421 / 9e-147 unknown protein Potri.005G250000 [exp] 79 / 5e-16 AT1G63610 441 / 7e-156 unknown protein Potri.002G011000 [exp] 76 / 5e-15 AT1G63610 431 / 3e-152 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013888 pacid=23159416 polypeptide=Lus10013888 locus=Lus10013888.g ID=Lus10013888.BGIv1.0 annot-version=v1.0 ATGGCAACTTCCTCCGTTGCCACCTCTCGTCCTTCTCTTCCTCTGATCCTCTCCTCTTCATCATCATCATCATCATCATCGTATTTGTCTGCATCTTCTT CACGACTCCGCCATAATAGCCTTCCTTCTTTCTCTCTTTCCTTCTCTTCCCCTCCTCTCCGAATCATCATCTCTGTAGCAAACCCTAGGAAAATCCGATC CTTAATCCGAGTCTCATCCAATTCAGCTTCTTCCTCTTCTTCTTCTTCGTCTTTCCAGGATGATATCGGCTCCAATTCAATACCTCCCGCTCCTGATAAG AAGTCAGTGCTCTCAGAGTTGATAGAAGAGATAGAACCATTGGATGTTAGCCTCATCCAGAAAGATGTCCCGCCTACTACCTTGGATGCTATGAAGCGGA CTATTTCAGGCATGTTGGGCTTACTTCCATCAGACCGTTTTCAAGTTTCTATCGAGGCACTGTGGGAACCCCTGTCCAAGTTATTAGTCTCCTCAATGAT GACCGGATACACATTGCGAAATGCTGAATATAGGCTTTGCCTTGAAAGAAACATTGATATAGAAGAGGAAAATGCTGACAATTGTGATACAGAAAGTTGC GAAGTAAATGTGCCTGGAACAGTAAACAGTCCAATAAAAAATCAGAGTTCTGGAAATGATATCCAGTCTGAGAAACTTACCGATGATTCAGCAGATGATA GCGCTGTGAAAGGCCTTGGTGAAATTCCACTGGAGGCTCAGCAATATATTCTTCATTTGCAGTCCCGTTTATCTTCTATGAAAAAGTTTGAGATTCTTGT GTGGAAGCTGAAATTGCTGAAAATAGAACCTGCATTGTTTGGCAGTCTGTTGTTGCTTCATCCAAATGGTAGCTGCCGCAACTCATTTTTTAGACTGTAT GATTATGTTCTTACAAAATGGTTTCCATACTTAAAGGAACTTCATGAAATCAAACGGAGGAGTGGTGCTCTTCAAATGCAACAGTTTGTTGGCGAAGAAA AGAATGATTTGTTGGACTACTTGCGATCTTTGAAGCCAGAAAAGGTAGCCGAGTTGTCTGAACCTACAACTGCCGAACTGAAAGAGACGATTCACTCTGT AGTCCATGGTCTTCTTGCAACCCTTTCTCCAAAGATGCACTACAAGTCTCCACCTCAATCAGAAACCACGCCATCTACAACTGTAGACCTCGACAGTGAA GATTTTGCAGAACTAGTTGGGAATACTTCACCGCCTCATTTCCAGGCCGAAATCTCACTGACAAGGGACTATCTGGCACGCCTACTATTCTGGTGCATGC TGTTGGGACACTACCTGCGGGGCCTCGAGTATCGAATGGAGCTGATGGAACTTCTGTCCTTAACAAATGAGTGA
AA sequence Show only first row Show all	>Lus10013888 pacid=23159416 polypeptide=Lus10013888 locus=Lus10013888.g ID=Lus10013888.BGIv1.0 annot-version=v1.0 MATSSVATSRPSLPLILSSSSSSSSSSYLSASSSRLRHNSLPSFSLSFSSPPLRIIISVANPRKIRSLIRVSSNSASSSSSSSSFQDDIGSNSIPPAPDK KSVLSELIEEIEPLDVSLIQKDVPPTTLDAMKRTISGMLGLLPSDRFQVSIEALWEPLSKLLVSSMMTGYTLRNAEYRLCLERNIDIEEENADNCDTESC EVNVPGTVNSPIKNQSSGNDIQSEKLTDDSADDSAVKGLGEIPLEAQQYILHLQSRLSSMKKFEILVWKLKLLKIEPALFGSLLLLHPNGSCRNSFFRLY DYVLTKWFPYLKELHEIKRRSGALQMQQFVGEEKNDLLDYLRSLKPEKVAELSEPTTAELKETIHSVVHGLLATLSPKMHYKSPPQSETTPSTTVDLDSE DFAELVGNTSPPHFQAEISLTRDYLARLLFWCMLLGHYLRGLEYRMELMELLSLTNE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14910			unknown protein		Lus10013888 [exp]	0	1
AT5G52580			RabGAP/TBC domain-containing p...		Lus10006646 [exp]	1.0	0.8748
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10035874 [exp]	4.6	0.8359
AT3G09830			Protein kinase superfamily pro...		Lus10026524 [exp]	5.8	0.8461
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10008163 [exp]	6.9	0.8076
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10040516 [exp]	6.9	0.8214
AT2G14910			unknown protein		Lus10026601 [exp]	7.9	0.7416
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10014929 [exp]	8.5	0.7752
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10020182 [exp]	9.9	0.7899
AT3G10970			Haloacid dehalogenase-like hyd...		Lus10029053 [exp]	11.0	0.7589
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10014128 [exp]	15.8	0.7691

Compare expression of checked genes

Lus10013888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.