Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34280 758 / 0 transducin family protein / WD-40 repeat family protein (.1) AT1G11160 59 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 57 / 4e-08 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 55 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 53 / 8e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 50 / 3e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 50 / 4e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 50 / 4e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G80710 50 / 8e-06 DRS1 DROUGHT SENSITIVE 1 (.1) AT5G58230 47 / 4e-05 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026603 [exp] 1617 / 0 AT4G34280 777 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10011224 [exp] 56 / 1e-07 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 56 / 2e-07 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002090 [exp] 54 / 2e-07 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10013452 [exp] 54 / 8e-07 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041007 [exp] 53 / 1e-06 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003855 [exp] 52 / 1e-06 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 49 / 1e-05 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 47 / 3e-05 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297600 [exp] 1085 / 0 AT4G34280 784 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.009G092500 [exp] 1085 / 0 AT4G34280 775 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.007G051500 [exp] 822 / 0 AT4G34280 541 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.011G045500 [exp] 56 / 1e-07 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 54 / 4e-07 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 54 / 6e-07 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 52 / 7e-07 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 52 / 7e-07 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 51 / 2e-06 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G112500 [exp] 49 / 9e-06 AT1G80710 512 / 1e-178 DROUGHT SENSITIVE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10013890 pacid=23159414 polypeptide=Lus10013890 locus=Lus10013890.g ID=Lus10013890.BGIv1.0 annot-version=v1.0 ATGGCTGCTCCGGGAATTACAACGTCAGTAAAAGTTTCCAGCTTGGAACAAATATATATTGACTCCTGTAGAAAACATTGGGTCTTACCTAACGCCACCA TTCTATCCTGTTTCTTAGAGGCCGACAATAGGAAGTCCTCCAGTGATCCTTGCAGTCTGGACATATTCTTTGATGATCTCACTGATATGGATTTTCAACC TCTTCTTGACATATCTATGGCCATTGAAGCATCTGATATTGAAGCTGTTGATATACATAATGGTTCCTCTTGTCCATTAAACGTAGAGTATGCTTTAGCA TTGATGCGTGCTTTTAATCAAAAGCTTAGGAGTGTTGATCTTCAAGATTCAACAAATGGAAAGGACGACCTCTTTAGGGAAATCTTTCGCAGAGGTACCC CATGTCAAGTCTTGAATCTGAGGTCTTCACGGATCAGGAAGCTTAACATGGTAGGGGAATTCACAAAGATGCATACACTCAATCTTGACTTTAGCACTTT GCTTACCAGCTTCCAGGAGGAATGTTTTACTCATATGCCAAACCTAACATACCTCTCGATGTGTGAGACGAGAGTCTCAAATCTCTGGACAACTGTTGCG GCACTTTCTAAGCTTTGTTCTTTAATAGAGCTTCGTTTTCAGAGGTGGGTCAGCTGCAATGACACTGCATCTACTTTGGTGTCATCTGATGGGAGTTCAG ATGACCAACTCAACATATCCAATATCCTTACAAGCAGTAGGAAACAACTAATTGAAAATGTTGAGACTTCAAATCTTGTCTCTGGCACAGAAGAGTCACT TAGGAACGTTCTTCCATTCAATGATACACGTGTAATTGAAGAACTCCAAAGCATGATGGAGGATCTGTCTGATGGGAGTGAAGCTGACTTTCCATTTCAT CACCAAGAAGCTGAATATGCAGGATTGTTTTCTAACAGTCCTCTTGAGCCGAATAGGCAAGCCAATTTGCAGACTGAGGGGTCCGCTAGCATGTTGTGGA ATCAGAATGAAGAGCCTTGTGTTATAACAAGATATGTTGGAGATGTGGCTTTTTCCTATGTTTCCTGCCACTCTTCACCGATATGCTATGAGAAACACTA TAGAGATTACATGATAACTTCACTGCCTAACCTGAAAGTTCTAGATAATTTATCTATCAGGAAGACTGACAGGGAAAGCGCTTCGGTTATATTTTCACAA TCCTTCGAGTACTTACCCTATAGACGAAAGGTCAAGGAGAGCGTTGTTAGTCTTCTGCATAAGCGCGAGACAAGAGCAATTCGTTCTTGTCCACAGATTA ACCAGCAGAAGCCTTCTTCACCATATGGGAGTTCACAATACTTCTACACACGTTCACTTAGTGCCGCCAAAGTGGGGTCTACTGCTTTGCCTTCCTTGCA TCCACTCTCTGTACCAAGTTGTGATTCGGCAGATAGAAGCAGAAGTTTCCGCCCAAGGCAGTTTGAGTACCATCCAACCATCTCTAGTCTCATGGTTTTC GGAACTTTAGATGGTGAAGTTGTTGTAATCAACCATGAGAATGAGAAAGTTGTTGGCTTTGTTCCTTACCTTGGAGCAATGAACAGTGTATTGGGCCTCT CGTGGCTAAAGAAGTATCCCTCAAAGCTTATAGCGGGATCGGATAATGGCTCACTGAAGTTATATGACATGGAGCATATGCCGTCGACTGCAACTGGGAT GTATTCAAGTGCCCGTGTCGTCACTTTTGATGATTTCGAACAATTGACATCTGTCCACGTCAACTCCACGGACGAACTATTTCTTGCAAGTGGCTACTCC AAGAATGTAGCTTTATACGATATCAATTACGGAAGGAGAATACAGGTGTTCAATGACATGCACAGGGAACATATAAATGTTGTGAAGTTCTCAAACCATA ATCCATCAGTGTTTGCTACTTCGTCATTCGATCAAGATGTCAAACTTTGGGACTTGAGACAAAAACCAACTTGCCCTTGCTATACAAGTTCAAGCACCAA GGGAAATGTGATGGTTTGCTTTTCTCCAGATGATCATTACCTTCTTGTCTCAGCTGTTGACAATGAGGTTCGACAACTTTTGGCTGTTGATGGAAGGCTT CATATGAATTTTGAAATACCACCTACTGGGAGTGCGCAGAATTACACTAGATCCTACTACATGAATGGTAGGGATTACATCATAAGTGGGAGTTGCGATG AACAAGTGGTCCGTGTTTGCTGCACTCAAACTGGGAGGCGTCTAAGAGACATTTCCTTGGAGGGTGAAAGTCTAGGATCTTCCATGTATGTCCAATCTTT GAGGGGCGATCCTTTCAGGGATTTCAACATGAGCGTCCTAGCTGCATACATGAGACCAAGCTCAAAATCCGAGATAGTCAAGGTAAATCCTAGCCAGCTA GTCTCTGTTTAA
AA sequence Show only first row Show all	>Lus10013890 pacid=23159414 polypeptide=Lus10013890 locus=Lus10013890.g ID=Lus10013890.BGIv1.0 annot-version=v1.0 MAAPGITTSVKVSSLEQIYIDSCRKHWVLPNATILSCFLEADNRKSSSDPCSLDIFFDDLTDMDFQPLLDISMAIEASDIEAVDIHNGSSCPLNVEYALA LMRAFNQKLRSVDLQDSTNGKDDLFREIFRRGTPCQVLNLRSSRIRKLNMVGEFTKMHTLNLDFSTLLTSFQEECFTHMPNLTYLSMCETRVSNLWTTVA ALSKLCSLIELRFQRWVSCNDTASTLVSSDGSSDDQLNISNILTSSRKQLIENVETSNLVSGTEESLRNVLPFNDTRVIEELQSMMEDLSDGSEADFPFH HQEAEYAGLFSNSPLEPNRQANLQTEGSASMLWNQNEEPCVITRYVGDVAFSYVSCHSSPICYEKHYRDYMITSLPNLKVLDNLSIRKTDRESASVIFSQ SFEYLPYRRKVKESVVSLLHKRETRAIRSCPQINQQKPSSPYGSSQYFYTRSLSAAKVGSTALPSLHPLSVPSCDSADRSRSFRPRQFEYHPTISSLMVF GTLDGEVVVINHENEKVVGFVPYLGAMNSVLGLSWLKKYPSKLIAGSDNGSLKLYDMEHMPSTATGMYSSARVVTFDDFEQLTSVHVNSTDELFLASGYS KNVALYDINYGRRIQVFNDMHREHINVVKFSNHNPSVFATSSFDQDVKLWDLRQKPTCPCYTSSSTKGNVMVCFSPDDHYLLVSAVDNEVRQLLAVDGRL HMNFEIPPTGSAQNYTRSYYMNGRDYIISGSCDEQVVRVCCTQTGRRLRDISLEGESLGSSMYVQSLRGDPFRDFNMSVLAAYMRPSSKSEIVKVNPSQL VSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34280			transducin family protein / WD...		Lus10013890 [exp]	0	1
AT4G34280			transducin family protein / WD...		Lus10026603 [exp]	1.0	0.9359
AT3G59660			C2 domain-containing protein /...		Lus10027067 [exp]	4.2	0.9066
AT4G27290			S-locus lectin protein kinase ...		Lus10014808 [exp]	4.9	0.8889
AT1G03055			unknown protein		Lus10018752 [exp]	8.7	0.8570
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10034853 [exp]	10.0	0.8656
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10020610 [exp]	12.6	0.8726
AT5G46150			LEM3 (ligand-effect modulator ...		Lus10023290 [exp]	13.2	0.8431
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10018083 [exp]	17.3	0.8737
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012041 [exp]	19.7	0.8847
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10032413 [exp]	20.5	0.8227

Compare expression of checked genes

Lus10013890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.