Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19540 656 / 0 Protein of unknown function (DUF620) (.1) AT1G49840 622 / 0 Protein of unknown function (DUF620) (.1) AT1G27690 524 / 0 Protein of unknown function (DUF620) (.1) AT1G79420 362 / 4e-122 Protein of unknown function (DUF620) (.1) AT5G05840 358 / 4e-120 Protein of unknown function (DUF620) (.1) AT5G06610 326 / 1e-108 Protein of unknown function (DUF620) (.1) AT5G66740 306 / 7e-101 Protein of unknown function (DUF620) (.1) AT3G55720 301 / 5e-98 Protein of unknown function (DUF620) (.1) AT1G75160 290 / 4e-94 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024790 [exp] 633 / 0 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 572 / 0 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026605 [exp] 502 / 1e-179 AT3G19540 405 / 2e-141 Protein of unknown function (DUF620) (.1) Lus10004669 [exp] 358 / 5e-120 AT5G05840 558 / 0.0 Protein of unknown function (DUF620) (.1) Lus10040241 [exp] 353 / 4e-118 AT5G05840 551 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026604 [exp] 342 / 2e-117 AT3G19540 249 / 6e-81 Protein of unknown function (DUF620) (.1) Lus10001755 [exp] 319 / 1e-104 AT1G79420 460 / 2e-160 Protein of unknown function (DUF620) (.1) Lus10001843 [exp] 316 / 3e-103 AT1G79420 452 / 2e-157 Protein of unknown function (DUF620) (.1) Lus10026031 [exp] 308 / 2e-101 AT5G66740 643 / 0.0 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297500 [exp] 726 / 0 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 692 / 0 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 634 / 0 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G174200 [exp] 402 / 3e-138 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 402 / 4e-138 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G062500 [exp] 378 / 5e-128 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G195200 [exp] 372 / 1e-125 AT5G05840 600 / 0.0 Protein of unknown function (DUF620) (.1) Potri.006G196800 [exp] 339 / 5e-114 AT5G06610 457 / 8e-162 Protein of unknown function (DUF620) (.1) Potri.016G062400 [exp] 330 / 2e-110 AT5G06610 474 / 1e-168 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 324 / 9e-108 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [flax] [poplar] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Lus10013891 pacid=23159417 polypeptide=Lus10013891 locus=Lus10013891.g ID=Lus10013891.BGIv1.0 annot-version=v1.0 ATGGAGAAAAAACAAGGCTTCTTTTCCGCTCTCAAGGGCGAAGTGGTCAGAGGACTTTCCCCTTCCCGCTCTCGCTCCCGCTCCTGCAGTCCGGCCCGCT CCGCTTCCCCCTTCTCAGGTCTCCTCCGCCGCAAGAAAGGCGGCGGCGGGAAGACCTACGTTTACCAGCCGGAACCGTTGATCGGGAGATCCGGTAGCTT GAGGCCGGTGGTAGGTGAAACCTTGACGCCGTTGATGGAAGGTCCCGATCCTGACGGAGAATGCGACCCGAAACCGTCCGGGTCGGGTTTGGGTCATTGG ATGAAAGGTCAGCTCTCCAGAACGCCTTCAGTCGCCGGCTCCGCCGCCGCGGCCTACAAGAGGTCTGATCTGAGGCTGCTACTTGGTGTCATGGGTGCTC CGTTGGCTCCGGTGCACGTTAGCACCATGGACCCTTTGCCTCTGCTCAGCATTAAAGACACTCCAATTGAAACTTCATCTGCACAGTACATATTGCAGCA GTACACAGCTGCATCTGGAGGGCAGAAGCTGCAGAACTCCATCCGGAATGCTTACGTGATGGGGAAGATTAAGATGATAACCTCCGAGTTCGAGACAGCC ACAACAGTGGTGAAGAATCGCAACGGTGCTAGGGGTGCTGAGACGGGTGGATTTGTTCTTTGGCAGATGAATCCAGACATGTGGTATGTTGAGCTTGCTG TGGGTGGTAGCAAGGTTCATGCTGGCTGCAATGGGAAGCTTGTTTGGCGCCACACACCTTGGCTTGGCGCCCACACTGCCAAAGGACCGGTTCGACCCCT TCGTCGTGCTCTTCAGGGTCTTGATCCAAGAACCACAGCTAGCTTATTTGCTGATGCAAGGTGCATAGGGGAGAAGAAGATCAACGGGGAAGATTGCTTT ATCCTGAAGCTGGGTGCTGATCCCGGGACATTGAAGGCAAGGAGTGAAGGTCCAGCTGAGATTATAAGGCACGTTCTGTTCGGCTACTTCAGTCAAAGGA CTGGACTTCTTGTTCACATGGAGGACTCACATTTGACCCGAATCCAATCCAATGGCGGCGATACAGTCTACTGGGAGACCACAATCAATTCGTTCCTCGA TGATTACAGACCCGTGGAAGGAATCATGATCGCTCATTCAGGGCATTCTGTGGTGACCCTGTACAGATTTGGGGAGGTGGCTATGAGCAATACAAAGACG AAGATGGAAGAAGCTTGGACCATTGAGGAAGTGGCTTTCAATGTTCCAGGTCTCTCAGTTGACTGTTTCATCCCTCCTGGAGATCTGAGGTCGGGTTCCG TCAGTGAAACCTGCGAAAGTTGTGGCGATAGAGAAATCTCAAGATATGTGCATGGACAACATGTGGAAGATGGAGCTGCAAAAGGCTAA
AA sequence Show only first row Show all	>Lus10013891 pacid=23159417 polypeptide=Lus10013891 locus=Lus10013891.g ID=Lus10013891.BGIv1.0 annot-version=v1.0 MEKKQGFFSALKGEVVRGLSPSRSRSRSCSPARSASPFSGLLRRKKGGGGKTYVYQPEPLIGRSGSLRPVVGETLTPLMEGPDPDGECDPKPSGSGLGHW MKGQLSRTPSVAGSAAAAYKRSDLRLLLGVMGAPLAPVHVSTMDPLPLLSIKDTPIETSSAQYILQQYTAASGGQKLQNSIRNAYVMGKIKMITSEFETA TTVVKNRNGARGAETGGFVLWQMNPDMWYVELAVGGSKVHAGCNGKLVWRHTPWLGAHTAKGPVRPLRRALQGLDPRTTASLFADARCIGEKKINGEDCF ILKLGADPGTLKARSEGPAEIIRHVLFGYFSQRTGLLVHMEDSHLTRIQSNGGDTVYWETTINSFLDDYRPVEGIMIAHSGHSVVTLYRFGEVAMSNTKT KMEEAWTIEEVAFNVPGLSVDCFIPPGDLRSGSVSETCESCGDREISRYVHGQHVEDGAAKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19540			Protein of unknown function (D...		Lus10013891 [exp]	0	1
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10041010 [exp]	1.4	0.7989
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10030368 [exp]	1.7	0.8101
AT5G60760			P-loop containing nucleoside t...		Lus10016116 [exp]	6.0	0.7871
AT3G19540			Protein of unknown function (D...		Lus10026604 [exp]	12.6	0.7905
AT3G58570			P-loop containing nucleoside t...		Lus10030075 [exp]	13.4	0.7524
AT5G24650			Mitochondrial import inner mem...		Lus10015593 [exp]	14.0	0.7409
AT2G05710		ACO3	aconitase 3 (.1)		Lus10039678 [exp]	14.7	0.7473
AT1G14180			RING/U-box superfamily protein...		Lus10002316 [exp]	17.5	0.7186
AT3G57120			Protein kinase superfamily pro...		Lus10016113 [exp]	21.0	0.6901
AT5G62620			Galactosyltransferase family p...		Lus10036686 [exp]	23.7	0.7096

Compare expression of checked genes

Lus10013891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.