Plant FIBer expression Database

Lus10013892 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43630 82 / 5e-18 unknown protein
AT3G59640 75 / 8e-16 glycine-rich protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002105
[exp]
330 / 2e-114 AT2G43630 87 / 5e-20 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G123800
[exp]
108 / 3e-28 AT2G43630 194 / 2e-61 unknown protein
PFAM info
Representative CDS sequence
>Lus10013892 pacid=23159497 polypeptide=Lus10013892 locus=Lus10013892.g ID=Lus10013892.BGIv1.0 annot-version=v1.0
ATGTCGGTTTCAAGCAAAATCGTTGTTCCCCAACCCTACGCCCCCATCTGCTTCCCATCTCTTCCTCTTCGACGACTTCCTCCGTCTTCCCTTTCATTTG
TCCCTGGGAATCAGGCCAAATCGATTGCTTCTTTGAAATTCGCGTATAAAACCTTGTTCGCACGCGGCAGATTCGCCACTAAGAACTCCGCAGCCTCACC
ATCCCCTGTGGTTTGTTGTTTGCTTGCTGGAGAAGGCAAACCTGATCGAGACAATCTGGGATTTCGATGGGAATCTTTTGAGAGAGCTGCGGATGGATTC
AGGCCGGAAGGACTCAAGCCGAAAAAGTCGGTAGAAGAGATGTTGCAAGAGCAAATTAGAAGAAGGCGATTCTCTGCTGGAGGCAGTGGCCAAAAACTTC
CAGGAGGCGGTGGTGGTCAAGGTGGCGGCCGCGGTGGTGGTGGTGATGATTCCGGAGGAGGAGGAGGAGTAGGAGATGAAGGCTCTTTCGGATTCTCTGA
TGAAGCTCTGCAAGTGATCTTAGCTACCATTGGTTTCATCTTTATGTATATTTACGTGATCCACGGAATGGAGATTAATCGGCTGGGAAAAGACTGCGTG
AAGTATCTCCGAACTGGTACTAAAAGTGCTCGCTTGAAGAAATTCATGGGTAAGTGGGGGAGTTTCCTTCAGTTCCTGCTTGCTACGATAGAGCATTACA
AGCCTCAATTCGAAAGAGAGATCGGCAATGCTGCAAGCCGGTTCAGTGGCATTACCAAGTACAAGCACAGATTGAGGTTGCACCAGGCATCACACGCGGA
ACAGTAG
AA sequence
>Lus10013892 pacid=23159497 polypeptide=Lus10013892 locus=Lus10013892.g ID=Lus10013892.BGIv1.0 annot-version=v1.0
MSVSSKIVVPQPYAPICFPSLPLRRLPPSSLSFVPGNQAKSIASLKFAYKTLFARGRFATKNSAASPSPVVCCLLAGEGKPDRDNLGFRWESFERAADGF
RPEGLKPKKSVEEMLQEQIRRRRFSAGGSGQKLPGGGGGQGGGRGGGGDDSGGGGGVGDEGSFGFSDEALQVILATIGFIFMYIYVIHGMEINRLGKDCV
KYLRTGTKSARLKKFMGKWGSFLQFLLATIEHYKPQFEREIGNAASRFSGITKYKHRLRLHQASHAEQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G43630 unknown protein Lus10013892
[exp]
0 1
AT3G19450 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE... Lus10002812
[exp]
2.4 0.9076
AT3G23000 PKS7, ATSRPK1, ... SNF1-RELATED PROTEIN KINASE 3.... Lus10039404
[exp]
5.5 0.8898
AT5G65660 hydroxyproline-rich glycoprote... Lus10039633
[exp]
8.5 0.8208
AT3G05320 O-fucosyltransferase family pr... Lus10018291
[exp]
10.2 0.8716
AT4G27270 Quinone reductase family prote... Lus10018401
[exp]
11.9 0.8946
AT4G39230 NmrA-like negative transcripti... Lus10026348
[exp]
13.8 0.8952
AT4G21215 unknown protein Lus10020063
[exp]
13.9 0.8381
AT4G16380 Heavy metal transport/detoxifi... Lus10039073
[exp]
14.0 0.8526
AT4G27270 Quinone reductase family prote... Lus10007612
[exp]
14.5 0.8735
AT2G21100 Disease resistance-responsive ... Lus10025063
[exp]
15.2 0.8797

Lus10013892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.