Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34290 114 / 2e-33 SWIB/MDM2 domain superfamily protein (.1) AT2G14880 111 / 4e-32 SWIB/MDM2 domain superfamily protein (.1) AT3G03590 84 / 3e-21 SWIB/MDM2 domain superfamily protein (.1) AT2G35605 76 / 9e-19 SWIB/MDM2 domain superfamily protein (.1) AT1G31760 73 / 2e-17 SWIB/MDM2 domain superfamily protein (.1) AT4G22360 53 / 8e-09 SWIB complex BAF60b domain-containing protein (.1) AT4G26810 50 / 1e-08 SWIB/MDM2 domain superfamily protein (.1.2) AT1G49520 49 / 1e-07 SWIB complex BAF60b domain-containing protein (.1) AT3G19080 49 / 2e-07 SWIB complex BAF60b domain-containing protein (.1) AT3G48600 46 / 1e-06 SWIB complex BAF60b domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002106 [exp] 115 / 1e-34 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10013894 [exp] 81 / 1e-18 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005667 [exp] 75 / 6e-18 AT3G03590 118 / 4e-35 SWIB/MDM2 domain superfamily protein (.1) Lus10019640 [exp] 52 / 2e-08 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10038799 [exp] 51 / 3e-08 AT4G26810 160 / 1e-50 SWIB/MDM2 domain superfamily protein (.1.2) Lus10009333 [exp] 49 / 1e-07 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10014892 [exp] 48 / 4e-07 AT4G22360 243 / 2e-76 SWIB complex BAF60b domain-containing protein (.1) Lus10016581 [exp] 48 / 4e-07 AT4G22360 190 / 1e-55 SWIB complex BAF60b domain-containing protein (.1) Lus10033312 [exp] 44 / 2e-06 AT2G35605 68 / 6e-16 SWIB/MDM2 domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297400 [exp] 140 / 8e-44 AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) Potri.009G092200 [exp] 139 / 5e-43 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1) Potri.013G070600 [exp] 80 / 5e-20 AT2G35605 108 / 2e-31 SWIB/MDM2 domain superfamily protein (.1) Potri.009G106700 [exp] 58 / 1e-10 AT1G49520 301 / 5e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.004G145200 [exp] 57 / 2e-10 AT1G49520 308 / 6e-103 SWIB complex BAF60b domain-containing protein (.1) Potri.015G137600 [exp] 51 / 5e-09 AT4G26810 181 / 1e-60 SWIB/MDM2 domain superfamily protein (.1.2) Potri.005G134500 [exp] 52 / 2e-08 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.006G010700 [exp] 49 / 2e-07 AT4G22360 303 / 2e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.016G013400 [exp] 48 / 3e-07 AT4G22360 301 / 1e-99 SWIB complex BAF60b domain-containing protein (.1) Potri.017G069300 [exp] 39 / 0.0005 AT5G14170 768 / 0.0 SWIB/MDM2 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02201 [flax] [poplar] SWIB SWIB/MDM2 domain
Representative CDS sequence Show only first row Show all	>Lus10013893 pacid=23159517 polypeptide=Lus10013893 locus=Lus10013893.g ID=Lus10013893.BGIv1.0 annot-version=v1.0 ATGGCGATTTCTTCCTCCACCACCACCTTCTTCTCCGCCGAATCGGTTACCTTTCTGAAGCCTTCCGCCACCTCTTCTCCGTCTTCTCTCCGACTTGTCG CCGCTCCGACTCCTCCTCCCAATAACCTCAGATACGGCCGCCTCAAGGTAACCTGCGCCGCTGCGTCCTCCAAAACCAGCCAGCCTCGTGGAATCATGAT TCCACGTCGCGTTTCTCCCGAAATGGCGGAGCTCGTCGGCGTCCCTGAAATCTCCCGCACCCAGGCTCTTAAATCCATTTGGAGCTATATCAAGGAGCAC AATCTCCAGGACCCAGAGAACAAGAAGATCATAAAATGTGATGACAAGCTGAAGAAGATATTCGCAGGAAAAGATCAGATTGGATTCCTGGAGATTGCCG GGTTAATTACCCCACACTTTCTCAAGTGA
AA sequence Show only first row Show all	>Lus10013893 pacid=23159517 polypeptide=Lus10013893 locus=Lus10013893.g ID=Lus10013893.BGIv1.0 annot-version=v1.0 MAISSSTTTFFSAESVTFLKPSATSSPSSLRLVAAPTPPPNNLRYGRLKVTCAAASSKTSQPRGIMIPRRVSPEMAELVGVPEISRTQALKSIWSYIKEH NLQDPENKKIIKCDDKLKKIFAGKDQIGFLEIAGLITPHFLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14880			SWIB/MDM2 domain superfamily p...		Lus10013893 [exp]	0	1
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10035110 [exp]	1.7	0.9395
AT4G11175			Nucleic acid-binding, OB-fold-...		Lus10035773 [exp]	3.2	0.9388
AT4G11175			Nucleic acid-binding, OB-fold-...		Lus10037352 [exp]	3.5	0.9229
AT5G52420			unknown protein		Lus10039249 [exp]	4.0	0.8706
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10009586 [exp]	4.2	0.9156
AT4G27990		ATYLMG1-2	YGGT family protein (.1)		Lus10020405 [exp]	5.0	0.9208
AT4G34290			SWIB/MDM2 domain superfamily p...		Lus10002106 [exp]	5.3	0.9135
AT4G37510			Ribonuclease III family protei...		Lus10019289 [exp]	6.0	0.9246
AT4G27620			unknown protein		Lus10028872 [exp]	7.1	0.8427
AT3G20230			Ribosomal L18p/L5e family prot...		Lus10007379 [exp]	9.5	0.9049

Compare expression of checked genes

Lus10013893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.